Details

scope
C57BL/6J young adult mice, brain-wide imaging
section_id
section_08
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_08_evidence_package.json
effect_size
10 µm voxel resolution; 1,675 brains averaged; 43 isocortical areas; 329 subcortical structures
review_repo
ComputationalReviewRecurrence
section_ref
wiki_page:computationalreviewrecurrence-08-cross-areal
source_kind
review_finding
source_path
evidence/section_08_evidence_package.json
study_system
C57BL/6J young adult mice, brain-wide imaging
section_title
8. Cross-areal mouse cortico-cortical excitatory connectivity — hierarchical feedforward and feedback as recurrent loops at the network level; Allen Mouse Connectivity Atlas anchored views
evidence_summary
Template constructed by interpolating serial two-photon tomography images from 1,675 young adult C57BL/6J mice.
review_bundle_ref
analysis_bundle:ab-d9c479db9be9
replication_status
single-study
review_package_ref
analysis_bundle:ab-d9c479db9be9
source_artifact_ref
wiki_page:computationalreviewrecurrence-08-cross-areal
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_08_evidence_package.json
commit_sha
79ce062d54a924ce05953ec90aa9d26044d2b48f
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence
Raw fields (6)
claim_text
The Allen Mouse Brain Common Coordinate Framework (CCFv3) provides a 10 µm-resolution 3D reference atlas with 43 isocortical areas (and their layers) and 329 subcortical gray-matter structures into which cortico-cortical connectivity datasets can be registered.
raw_fields
{
  "n": 1675,
  "doi": "10.1016/j.cell.2020.04.007",
  "claim": "The Allen Mouse Brain Common Coordinate Framework (CCFv3) provides a 10 µm-resolution 3D reference atlas with 43 isocortical areas (and their layers) and 329 subcortical gray-matter structures into which cortico-cortical connectivity datasets can be registered.",
  "cite_key": "Wang2020a",
  "evidence": "Template constructed by interpolating serial two-photon tomography images from 1,675 young adult C57BL/6J mice.",
  "effect_size": "10 µm voxel resolution; 1,675 brains averaged; 43 isocortical areas; 329 subcortical structures",
  "text_access": "abstract_only",
  "study_system": "C57BL/6J young adult mice, brain-wide imaging",
  "argument_role": "supporting",
  "replication_status": "single-study",
  "claim_source_sentence": "Then, using multimodal reference data, we parcellated the entire brain directly in 3D, labeling every voxel with a brain structure spanning 43 isocortical areas and their layers, 329 subcortical gray matter structures, 81 fiber tracts, and 8 ventricular structures.",
  "source_provenance_status": "non_substring_match",
  "replication_evidence_dois": [],
  "effect_size_source_sentence": "We constructed an average template brain at 10 μm voxel resolution by interpolating high resolution in-plane serial two-photon tomography images with 100 μm z-sampling from 1,675 young adult C57BL/6J mice."
}
source_refs
[
  "paper:paper-01b43f29f560"
]
source_span
Then, using multimodal reference data, we parcellated the entire brain directly in 3D, labeling every voxel with a brain structure spanning 43 isocortical areas and their layers, 329 subcortical gray matter structures, 81 fiber tracts, and 8 ventricular structures.
evidence_refs
[
  {
    "ref": "paper:paper-01b43f29f560"
  }
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "79ce062d54a924ce05953ec90aa9d26044d2b48f",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence"
}

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