Details

scope
human and mouse cortical L1 Patch-seq cross-species
section_id
section_05
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_05_evidence_package.json
effect_size
qualitative — VIP L1 types occupy deeper L1 in mouse, broader L1 distribution in human
review_repo
ComputationalReviewVIP
section_ref
wiki_page:computationalreviewvip-05-electrophysiology
source_kind
review_finding
source_path
evidence/section_05_evidence_package.json
study_system
human and mouse cortical L1 Patch-seq cross-species
section_title
Intrinsic Electrophysiology
evidence_summary
Patch-seq atlas of L1 GABAergic interneurons in human (n=323) and mouse (n=440) cortex, with cross-species transcriptomic alignment and morphology
review_bundle_ref
analysis_bundle:ab-2ce40c33e827
replication_status
replicated
review_package_ref
analysis_bundle:ab-2ce40c33e827
source_artifact_ref
wiki_page:computationalreviewvip-05-electrophysiology
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_05_evidence_package.json
commit_sha
95e761177f7d2ec565983d3307c14ec238f9677c
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP
Raw fields (6)
claim_text
In contrast to mouse, where Vip+ L1 interneurons localize to deeper L1, the equivalent VIP transcriptomic types in human cortex spread across L1, indicating species divergence in laminar position of L1-VIP cells that constrains cross-species comparisons of L1 VIP intrinsic-ephys recordings.
raw_fields
{
  "n": null,
  "doi": "10.1126/science.adf0805",
  "claim": "In contrast to mouse, where Vip+ L1 interneurons localize to deeper L1, the equivalent VIP transcriptomic types in human cortex spread across L1, indicating species divergence in laminar position of L1-VIP cells that constrains cross-species comparisons of L1 VIP intrinsic-ephys recordings.",
  "title": null,
  "cite_key": "Chartrand2023",
  "evidence": "Patch-seq atlas of L1 GABAergic interneurons in human (n=323) and mouse (n=440) cortex, with cross-species transcriptomic alignment and morphology",
  "effect_size": "qualitative — VIP L1 types occupy deeper L1 in mouse, broader L1 distribution in human",
  "text_access": "fulltext",
  "study_system": "human and mouse cortical L1 Patch-seq cross-species",
  "_source_cluster": "cluster_04_intrinsic_electrophysiology",
  "replication_status": "replicated",
  "_source_cluster_index": 14,
  "claim_source_sentence": "Similarly, given the sublaminar selectivity of thalamic projections to Vip + versus Ndnf + cells in mouse L1 ( 56 ), the human L1 VIP types which are located in deeper layers in mouse may be especially relevant to thalamocortical microcircuit structure.",
  "replication_evidence_dois": [
    "10.1126/science.adf6484",
    "10.1038/s41586-021-03465-8"
  ],
  "effect_size_source_sentence": "Similarly, given the sublaminar selectivity of thalamic projections to Vip + versus Ndnf + cells in mouse L1 ( 56 ), the human L1 VIP types which are located in deeper layers in mouse may be especially relevant to thalamocortical microcircuit structure."
}
source_refs
[
  "paper:paper-86dac47be132"
]
source_span
Similarly, given the sublaminar selectivity of thalamic projections to Vip + versus Ndnf + cells in mouse L1 ( 56 ), the human L1 VIP types which are located in deeper layers in mouse may be especially relevant to thalamocortical microcircuit structure.
evidence_refs
[
  {
    "ref": "paper:paper-86dac47be132"
  }
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "95e761177f7d2ec565983d3307c14ec238f9677c",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP"
}

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