Details

scope
mouse cortex, double-fluorescence transgenic
section_id
section_03
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_03_evidence_package.json
effect_size
Zero overlap between MGE-fate-mapped (Nkx2-1) and CGE-fate-mapped (5HT3aR-EGFP) populations
review_repo
ComputationalReviewVIP
section_ref
wiki_page:computationalreviewvip-03-development
source_kind
review_finding
source_path
evidence/section_03_evidence_package.json
source_span
One was by combining the Nkx2-1-BAC cre and the cre-dependent red R26R tdRFP reporter with 5HT3aR-BAC EGFP showing that there is no overlap between red and green cells.
study_system
mouse cortex, double-fluorescence transgenic
section_title
Developmental Origins and Postnatal Maturation
evidence_summary
Combinatorial 5HT3a-BAC EGFP × Nkx2-1-BAC-Cre tdRFP transgenic crosses; immunohistochemistry/imaging of mouse cortex.
review_bundle_ref
analysis_bundle:ab-2ce40c33e827
replication_status
review
review_package_ref
analysis_bundle:ab-2ce40c33e827
source_artifact_ref
wiki_page:computationalreviewvip-03-development
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_03_evidence_package.json
commit_sha
95e761177f7d2ec565983d3307c14ec238f9677c
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP
Raw fields (5)
claim_text
The 5HT3a-BAC EGFP transgenic mouse line specifically labels CGE-derived 5HT3aR+ cortical interneurons including all VIP-expressing populations, with no overlap detected with Nkx2-1-BAC-Cre tdRFP-labeled MGE-lineage cells — providing the foundational genetic validation that all VIP-expressing cortical interneurons are CGE-derived and 5HT3aR-positive.
raw_fields
{
  "n": null,
  "doi": "10.1002/dneu.20853",
  "claim": "The 5HT3a-BAC EGFP transgenic mouse line specifically labels CGE-derived 5HT3aR+ cortical interneurons including all VIP-expressing populations, with no overlap detected with Nkx2-1-BAC-Cre tdRFP-labeled MGE-lineage cells — providing the foundational genetic validation that all VIP-expressing cortical interneurons are CGE-derived and 5HT3aR-positive.",
  "title": null,
  "cite_key": "Rudy2011",
  "evidence": "Combinatorial 5HT3a-BAC EGFP × Nkx2-1-BAC-Cre tdRFP transgenic crosses; immunohistochemistry/imaging of mouse cortex.",
  "effect_size": "Zero overlap between MGE-fate-mapped (Nkx2-1) and CGE-fate-mapped (5HT3aR-EGFP) populations",
  "figure_data": [],
  "text_access": "fulltext",
  "study_system": "mouse cortex, double-fluorescence transgenic",
  "_source_cluster": "cluster_02_development_lineage",
  "replication_status": "review",
  "_source_cluster_index": 119,
  "claim_source_sentence": "One was by combining the Nkx2-1-BAC cre and the cre-dependent red R26R tdRFP reporter with 5HT3aR-BAC EGFP showing that there is no overlap between red and green cells.",
  "replication_evidence_dois": [
    "10.1523/jneurosci.1869-10.2010"
  ],
  "effect_size_source_sentence": "One was by combining the Nkx2-1-BAC cre and the cre-dependent red R26R tdRFP reporter with 5HT3aR-BAC EGFP showing that there is no overlap between red and green cells."
}
source_refs
[
  "paper:34a07597-2d6f-4552-b9cf-d2d11817f9f9"
]
evidence_refs
[
  {
    "ref": "paper:34a07597-2d6f-4552-b9cf-d2d11817f9f9"
  }
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "95e761177f7d2ec565983d3307c14ec238f9677c",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP"
}

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