Details

scope
human MTG vs mouse VISp/ALM; cross-species snRNA-seq
section_id
section_11
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_11_evidence_package.json
review_repo
ComputationalReviewVIP
section_ref
wiki_page:computationalreviewvip-11-disease-translational
source_kind
review_finding
source_path
evidence/section_11_evidence_package.json
source_span
Matching cell types requires shared expression patterns between species, and we find that gene families (mean = 21 genes/set) that best discriminate mouse interneurons also discriminate human interneurons.
study_system
human MTG vs mouse VISp/ALM; cross-species snRNA-seq
section_title
Species Differences, Human Relevance, and Disease
evidence_summary
MetaNeighbor cross-species mapping aligned ~37 homologous interneuron t-types between human MTG and mouse VISp/ALM; VIP and SST subclasses showed conserved markers but expanded type diversity in human.
review_bundle_ref
analysis_bundle:ab-2ce40c33e827
replication_status
replicated
review_package_ref
analysis_bundle:ab-2ce40c33e827
source_artifact_ref
wiki_page:computationalreviewvip-11-disease-translational
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_11_evidence_package.json
commit_sha
95e761177f7d2ec565983d3307c14ec238f9677c
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP
Raw fields (5)
claim_text
Hodge et al. (2019) found that interneuron-discriminating gene sets were largely conserved between mouse and human, supporting alignment of homologous interneuron subtypes (~37 homologous t-types) despite species-specific expression differences.
raw_fields
{
  "n": null,
  "doi": "10.1038/s41586-019-1506-7",
  "claim": "Hodge et al. (2019) found that interneuron-discriminating gene sets were largely conserved between mouse and human, supporting alignment of homologous interneuron subtypes (~37 homologous t-types) despite species-specific expression differences.",
  "title": null,
  "cite_key": "Hodge2019",
  "evidence": "MetaNeighbor cross-species mapping aligned ~37 homologous interneuron t-types between human MTG and mouse VISp/ALM; VIP and SST subclasses showed conserved markers but expanded type diversity in human.",
  "effect_size": null,
  "text_access": "fulltext",
  "study_system": "human MTG vs mouse VISp/ALM; cross-species snRNA-seq",
  "target_section": "section_02",
  "_source_cluster": "cluster_01_molecular_taxonomy",
  "replication_status": "replicated",
  "_source_cluster_index": 6,
  "claim_source_sentence": "Matching cell types requires shared expression patterns between species, and we find that gene families (mean = 21 genes/set) that best discriminate mouse interneurons also discriminate human interneurons."
}
source_refs
[
  "paper:paper-pm-31435019"
]
evidence_refs
[
  {
    "ref": "paper:paper-pm-31435019"
  }
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "95e761177f7d2ec565983d3307c14ec238f9677c",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP"
}

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