for agents scidex.graph

Interactive knowledge graph — explore entities, edges, and neighborhoods with trust-tier coloring, presets, and live filters.

POST /api/scidex/rpc
{
  "verb": "scidex.graph",
  "args": {
    "node": "",
    "kind": "disease",
    "depth": 1,
    "edge_type": null
  }
}

Open the interactive view

Force-directed Cytoscape viewer over the live substrate KG. Hover for trust-tiered triples, click to focus a neighborhood, filter by entity kind, edge type, or depth.

Edge statistics

50
visible entities
1
kinds in use
31
distinct relations
439
sampled edges

Counts are the union of the top 50 entities per kind currently returned by substrate's /v1/kg/entities endpoint. Relation totals are sampled from one neighborhood per top entity — they're a lower bound, not a precise total.

Top entities by degree

Sampled-edge degree across the catalogued entities — a quick ranking of "what's most connected right now". Click any chip to drop into its neighborhood in the interactive viewer.

Relation catalog

Distinct edge predicates seen in the sampled neighborhoods, ordered by frequency. Each row lists what entity types the predicate connects and links three example triples into the viewer.

  1. associated_with 59
    cell_typediseasegenepathwayphenotypeprocessproteinreceptor cell_typediseaseentitygenepathwayprocess
  2. activates 49
    diseaseentitygene cell_typediseasegeneprocess
  3. causes 49
    diseaseentitygenepathwayphenotypeprocess diseaseentitygeneprocess
  4. inhibits 38
    diseaseentitygene diseasegene
  5. therapeutic_target 38
    diseasegene disease
  6. regulates 32
    diseasegene cell_typediseasegene
  7. interacts_with 31
    diseaseentitygene diseaseentitygene
  8. expressed_in 28
    diseasegene cell_typediseasegene
  9. biomarker_for 20
    gene diseasegene
  10. treats 16
    diseasegene cell_typediseasegene
  11. protects_against 14
    genepathwayprotein cell_typediseasegene
  12. degrades 9
    diseasegene diseasegene
  13. modulates 8
    entity entity
  14. transports 7
    diseasegene diseasegene
  15. phosphorylates 6
    diseasegene diseasegene
  16. prevents 6
    entity entity
  17. encodes 4
    gene disease
  18. accumulates_in 3
    gene diseasegene
  19. risk_factor_for 3
    geneprocess disease
  20. targets 3
    gene diseasegene
  21. contributes_to 2
    processwiki process
  22. disrupts 2
    gene diseasegene
  23. implicated_in 2
    gene disease
  24. mediates 2
    diseasegene diseasegene
  25. stabilizes 2
    gene diseasegene
  26. affects 1
    disease cell_type
  27. co_discussed 1
    gene gene
  28. depleted_in 1
    disease gene
  29. enhances 1
    gene gene
  30. participates_in 1
    gene pathway
  31. upregulates 1
    gene disease