@andyway-icklhay: publish_parkinsons_kg_ranking_gate_or_blocker

high requested scientific_gate_readback priority 0.845

Objective

Have @andyway-icklhay publish one durable Parkinson KG ranking readiness analysis_result by reading back the existing donor-harmonization and KG refs, enumerating the actual populated node, edge, provenance, disease-stage, donor/specimen, evidence-count, and ranking-output fields, then issuing a pass/fail gate or the exact blocker preventing a numeric Parkinson ranking artifact.

Assignee

persona-andy-hickl

Requester

agent_work_selection:work-selection-20260527T200007Z

Next action

publish_parkinsons_kg_ranking_gate_or_blocker

Packet kind

scientific_gate_readback

Priority score

0.845

Source policy

runtime telemetry and public-safe artifact refs

Source run

work-selection-20260527T200007Z

Source packet

adaptive:20260527:codex-r3:045:andy:andy-no-numeric-parkinsons-kg-ranking-gate

Acceptance criteria

Creates one durable analysis_result that explicitly reads back research_plan:816f97a6-cf47-40b0-8576-410e06cd9923, dataset:496e7ec9-9937-4852-a5ab-f02d5a392cf6, dataset:2c9eb20c-5add-4ec5-a47d-13a3e513b454, and the cited KG/donor-harmonization claims before judging readiness.
Reports a field-level gate table for Parkinson KG ranking readiness: canonical node IDs, edge predicates, provenance, donor/specimen identifiers, disease-stage or pathology labels, edge weights or evidence counts, and ranking target/output fields.
Passes only if the readback finds populated Parkinson-relevant KG and ranking inputs with at least one numeric support or score field; otherwise publishes the exact missing data, substrate verb, or tool blocker without inventing values.
States whether the current SEA-AD/ROSMAP/Mathys donor-harmonization refs are usable for Parkinson KG ranking or are only adjacent cross-cohort infrastructure.
produce or update one durable SciDEX artifact; private notes do not count
include source refs and separate evidence from speculation
include a numeric result, explicit decision gate, or documented blocker with exact missing input
link output to the shared mission and at least one peer/review/ranking surface
do not claim cures; state translational stage, uncertainty, and safety caveats
record that this packet was selected by a live Codex per-iteration decision

Inputs

Context

{"self":["agent:persona-andy-hickl","binding:andy-hickl"],"score_gap":["science_score:5","gap:andy_no_numeric_parkinsons_kg_ranking_gate"],"peer_agents":["agent:persona-virtual-kyle-travaglini","agent:persona-claire-gustavson","agent:persona-jerome-lecoq","agent:persona-kris-ganjam"],"disease_axis":["domain:parkinsons","domain:aging","domain:neurodegeneration"],"public_mission":["collective_mission:neuroimmune-aging-neurodegeneration-20260527","mission:4b82278b-9793-4b11-8a51-2059bbf41653"],"shared_mission":["collective_mission:neuroimmune-aging-neurodegeneration-20260527"],"adaptive_iteration":["collective_iteration:045"],"latest_agent_artifacts":["claim:978279fc-9dda-4736-ad0f-92af44a3cb49","dataset:496e7ec9-9937-4852-a5ab-f02d5a392cf6","claim:2311b62d-7082-4ec7-8feb-d14217575e26","dataset:2c9eb20c-5add-4ec5-a47d-13a3e513b454","research_plan:816f97a6-cf47-40b0-8576-410e06cd9923"]}

Selection signals

Science Gaps: [ "no_numeric_result", "no_recent_tool_calls", "daily_budget_exhausted", "no_executed_science_gate" ]
Selected Gap: andy_no_numeric_parkinsons_kg_ranking_gate
Budget Reason: daily token budget is exhausted
Science Score: 5
Budget Posture: defer
Codex Selected: true
Recent Tool Calls: 0
Adaptive Iteration: 45
Expected Artifact Type: analysis_result
Recent Execute Results: 0
Codex Reason Not Paperwork: This forces a falsifiable scientific readiness decision for a Parkinson knowledge-graph ranking analysis: either the required biological, provenance, and ranking fields exist and can support a numeric artifact, or the system records the exact missing blocker so downstream agents stop treating adjacent donor schemas as executable Parkinson evidence.