Mouse-cortex anatomy primer: areal map, layer structure, projection-class nomen…

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Mouse-cortex anatomy primer: areal map, layer structure, projection-class nomenclature, and tools for E→E dissection

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  • 1Citationpaper:paper-259a50694faaThe convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...

  • 1Citationpaper:paper-259a50694faaThe convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...

  • 2Citationpaper:paper-pm-34616075The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...

  • 3Citationpaper:paper-0c694a60c289The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...

  • 4Citationpaper:paper-pm-34616062The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...

  • 5Citationpaper:paper-56bdac4380cbThe convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...

  • 6Citationpaper:paper-dea7638ea150The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...

  • 7Citationpaper:paper-3890a436fee7The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...

  • 8Citationpaper:paper-574c53257981The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...

  • 9Citationpaper:paper-04affa4a6e03The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...

  • 1Citationpaper:paper-259a50694faaThe convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference0 Cross-species transport of the mouse projection-class taxonomy. 1Citationpaper:paper-259a50694faaThe convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference1 find a broadly conserved cellular taxonomy of primary motor cortex across human, marmoset and mouse — the IT / PT / CT cell-class labels carry across species — but few cell-type marker genes are conserved, so mouse-defined molecular identifiers do not transfer directly. 1Citationpaper:paper-259a50694faaThe convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference2 show that the mouse corticospinal/PT system makes transien...

  • 1Citationpaper:paper-259a50694faaThe convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference3 Cross-species transport of the mouse projection-class taxonomy. 1Citationpaper:paper-259a50694faaThe convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference4 find a broadly conserved cellular taxonomy of primary motor cortex across human, marmoset and mouse — the IT / PT / CT cell-class labels carry across species — but few cell-type marker genes are conserved, so mouse-defined molecular identifiers do not transfer directly. 1Citationpaper:paper-259a50694faaThe convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference5 show that the mouse corticospinal/PT system makes transien...

  • 1Citationpaper:paper-259a50694faaThe convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference6 The same coordinate system is sliced orthogonally by a six-layer (with sublamination of L5 into L5A and L5B) laminar convention that the empirical chapters use without further definition. In barrel cortex, paired-recording mapping of the C2 column established layer-dependent E→E connection probabilities and the layer-by-layer short-term-plasticity profile (depression at most layer pairs, presynaptic-L2 facilitation)...

  • 1Citationpaper:paper-259a50694faaThe convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference7 The same coordinate system is sliced orthogonally by a six-layer (with sublamination of L5 into L5A and L5B) laminar convention that the empirical chapters use without further definition. In barrel cortex, paired-recording mapping of the C2 column established layer-dependent E→E connection probabilities and the layer-by-layer short-term-plasticity profile (depression at most layer pairs, presynaptic-L2 facilitation)...

  • 1Citationpaper:paper-259a50694faaThe convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference8 The same coordinate system is sliced orthogonally by a six-layer (with sublamination of L5 into L5A and L5B) laminar convention that the empirical chapters use without further definition. In barrel cortex, paired-recording mapping of the C2 column established layer-dependent E→E connection probabilities and the layer-by-layer short-term-plasticity profile (depression at most layer pairs, presynaptic-L2 facilitation)...

  • 1Citationpaper:paper-259a50694faaThe convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference9 The same coordinate system is sliced orthogonally by a six-layer (with sublamination of L5 into L5A and L5B) laminar convention that the empirical chapters use without further definition. In barrel cortex, paired-recording mapping of the C2 column established layer-dependent E→E connection probabilities and the layer-by-layer short-term-plasticity profile (depression at most layer pairs, presynaptic-L2 facilitation)...

  • 2Citationpaper:paper-pm-34616075The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference0 The same coordinate system is sliced orthogonally by a six-layer (with sublamination of L5 into L5A and L5B) laminar convention that the empirical chapters use without further definition. In barrel cortex, paired-recording mapping of the C2 column established layer-dependent E→E connection probabilities and the layer-by-layer short-term-plasticity profile (depression at most layer pairs, presynaptic-L2 facilitation)...

  • 2Citationpaper:paper-pm-34616075The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference1 The same coordinate system is sliced orthogonally by a six-layer (with sublamination of L5 into L5A and L5B) laminar convention that the empirical chapters use without further definition. In barrel cortex, paired-recording mapping of the C2 column established layer-dependent E→E connection probabilities and the layer-by-layer short-term-plasticity profile (depression at most layer pairs, presynaptic-L2 facilitation)...

  • 2Citationpaper:paper-pm-34616075The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference2 The same coordinate system is sliced orthogonally by a six-layer (with sublamination of L5 into L5A and L5B) laminar convention that the empirical chapters use without further definition. In barrel cortex, paired-recording mapping of the C2 column established layer-dependent E→E connection probabilities and the layer-by-layer short-term-plasticity profile (depression at most layer pairs, presynaptic-L2 facilitation)...

  • 2Citationpaper:paper-pm-34616075The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference3 The same coordinate system is sliced orthogonally by a six-layer (with sublamination of L5 into L5A and L5B) laminar convention that the empirical chapters use without further definition. In barrel cortex, paired-recording mapping of the C2 column established layer-dependent E→E connection probabilities and the layer-by-layer short-term-plasticity profile (depression at most layer pairs, presynaptic-L2 facilitation)...

  • 2Citationpaper:paper-pm-34616075The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference4 The same coordinate system is sliced orthogonally by a six-layer (with sublamination of L5 into L5A and L5B) laminar convention that the empirical chapters use without further definition. In barrel cortex, paired-recording mapping of the C2 column established layer-dependent E→E connection probabilities and the layer-by-layer short-term-plasticity profile (depression at most layer pairs, presynaptic-L2 facilitation)...

  • 2Citationpaper:paper-pm-34616075The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference5 The same coordinate system is sliced orthogonally by a six-layer (with sublamination of L5 into L5A and L5B) laminar convention that the empirical chapters use without further definition. In barrel cortex, paired-recording mapping of the C2 column established layer-dependent E→E connection probabilities and the layer-by-layer short-term-plasticity profile (depression at most layer pairs, presynaptic-L2 facilitation)...

  • 2Citationpaper:paper-pm-34616075The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference6 Mouse cortical anatomy primer. Panel A, dorsal areal map of mouse neocortex showing V1, A1, S1-barrel, M1, M2 / ALM, RSC, PPC and the higher visual areas (AM, PM, AL, LM, RL), with labels following Allen CCF / Harris-2019 conventions 2Citationpaper:paper-pm-34616075The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference7. Panel B, a single cortical column with the six-layer + L5A / L5B convention used throughout the review, populated with example IT (blue), PT (red) and CT (gree...

  • 2Citationpaper:paper-pm-34616075The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference8 Mouse cortical anatomy primer. Panel A, dorsal areal map of mouse neocortex showing V1, A1, S1-barrel, M1, M2 / ALM, RSC, PPC and the higher visual areas (AM, PM, AL, LM, RL), with labels following Allen CCF / Harris-2019 conventions 2Citationpaper:paper-pm-34616075The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference9. Panel B, a single cortical column with the six-layer + L5A / L5B convention used throughout the review, populated with example IT (blue), PT (red) and CT (gree...

  • 3Citationpaper:paper-0c694a60c289The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference0 The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...

  • 3Citationpaper:paper-0c694a60c289The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference1 The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...

  • 3Citationpaper:paper-0c694a60c289The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference2 The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...

  • 3Citationpaper:paper-0c694a60c289The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference3 The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...

  • 3Citationpaper:paper-0c694a60c289The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference4 The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...

  • 3Citationpaper:paper-0c694a60c289The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference5 The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...

  • 3Citationpaper:paper-0c694a60c289The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference6 The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...

  • 3Citationpaper:paper-0c694a60c289The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference7 The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...

  • 3Citationpaper:paper-0c694a60c289The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference8 The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...

  • 3Citationpaper:paper-0c694a60c289The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference9 The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...

  • 4Citationpaper:paper-pm-34616062The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference0 The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...

  • 4Citationpaper:paper-pm-34616062The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference1 The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...

  • 4Citationpaper:paper-pm-34616062The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference2 The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...

  • 4Citationpaper:paper-pm-34616062The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference3 The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...

  • 4Citationpaper:paper-pm-34616062The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference4 The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...

  • 4Citationpaper:paper-pm-34616062The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference5 The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...

  • 4Citationpaper:paper-pm-34616062The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference6 The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...

  • 4Citationpaper:paper-pm-34616062The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference7 The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...

  • 4Citationpaper:paper-pm-34616062The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference8 The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...

  • 4Citationpaper:paper-pm-34616062The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference9 The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...

  • 5Citationpaper:paper-56bdac4380cbThe convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference0 Within the three top classes the resolution depends on the assay. Patch-seq morpho-electric features in mouse M1 do not cleanly separate the fine transcriptomic subtypes within a class 5Citationpaper:paper-56bdac4380cbThe convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference1, whereas a Patch-seq + whole-cell-morphology pipeline in V1 defines 16 integrated morpho-electric-transcriptomic (MET) types and 300 fully reconstructed excitatory morphologies 5Citationpaper:paper-56bdac4380cbThe convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference2 — this is the field’s central...

  • 5Citationpaper:paper-56bdac4380cbThe convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference3 Within the three top classes the resolution depends on the assay. Patch-seq morpho-electric features in mouse M1 do not cleanly separate the fine transcriptomic subtypes within a class 5Citationpaper:paper-56bdac4380cbThe convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference4, whereas a Patch-seq + whole-cell-morphology pipeline in V1 defines 16 integrated morpho-electric-transcriptomic (MET) types and 300 fully reconstructed excitatory morphologies 5Citationpaper:paper-56bdac4380cbThe convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference5 — this is the field’s central...

  • 5Citationpaper:paper-56bdac4380cbThe convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference6 Within the three top classes the resolution depends on the assay. Patch-seq morpho-electric features in mouse M1 do not cleanly separate the fine transcriptomic subtypes within a class 5Citationpaper:paper-56bdac4380cbThe convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference7, whereas a Patch-seq + whole-cell-morphology pipeline in V1 defines 16 integrated morpho-electric-transcriptomic (MET) types and 300 fully reconstructed excitatory morphologies 5Citationpaper:paper-56bdac4380cbThe convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference8 — this is the field’s central...

  • 5Citationpaper:paper-56bdac4380cbThe convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference9 Within the three top classes the resolution depends on the assay. Patch-seq morpho-electric features in mouse M1 do not cleanly separate the fine transcriptomic subtypes within a class 6Citationpaper:paper-dea7638ea150The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference0, whereas a Patch-seq + whole-cell-morphology pipeline in V1 defines 16 integrated morpho-electric-transcriptomic (MET) types and 300 fully reconstructed excitatory morphologies 6Citationpaper:paper-dea7638ea150The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference1 — this is the field’s central...

  • 6Citationpaper:paper-dea7638ea150The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference2 Within the three top classes the resolution depends on the assay. Patch-seq morpho-electric features in mouse M1 do not cleanly separate the fine transcriptomic subtypes within a class 6Citationpaper:paper-dea7638ea150The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference3, whereas a Patch-seq + whole-cell-morphology pipeline in V1 defines 16 integrated morpho-electric-transcriptomic (MET) types and 300 fully reconstructed excitatory morphologies 6Citationpaper:paper-dea7638ea150The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference4 — this is the field’s central...

  • 6Citationpaper:paper-dea7638ea150The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference5 Within the three top classes the resolution depends on the assay. Patch-seq morpho-electric features in mouse M1 do not cleanly separate the fine transcriptomic subtypes within a class 6Citationpaper:paper-dea7638ea150The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference6, whereas a Patch-seq + whole-cell-morphology pipeline in V1 defines 16 integrated morpho-electric-transcriptomic (MET) types and 300 fully reconstructed excitatory morphologies 6Citationpaper:paper-dea7638ea150The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...content/02_anatomy_primer.md:line 9Open reference7 — this is the field’s central...

  • ... 84 additional anchors in refs_json

References

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  7. [Aronoff2010] paper:paper-3890a436fee7 “The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...”
  8. [Liu2022b] paper:paper-574c53257981 “The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...”
  9. [Liu2024d] paper:paper-04affa4a6e03 “The convention that mouse neocortex divides cleanly into named areas — primary visual (V1), primary somatosensory barrel (S1-barrel), primary auditory (A1), primary motor (M1), secondary motor / anterior lateral motor (M2 / ALM), retrosplenial (RSC), posterior parietal (PPC), and a set of higher visual areas (HVAs: LM, AL, RL, AM, PM) — is the operational frame for the empirical chapters that follow, and it descends...”
  10. [Gu2017] paper:paper-5095a8dd70d7 “**Cross-species transport of the mouse projection-class taxonomy.** [Bakken2021] find a broadly conserved cellular taxonomy of primary motor cortex across human, marmoset and mouse — the IT / PT / CT cell-class labels carry across species — but few cell-type marker genes are conserved, so mouse-defined molecular identifiers do not transfer directly. [Gu2017] show that the mouse corticospinal/PT system makes transien...”
  11. [Lefort2017] paper:paper-1f2e0ebd9f4c “The same coordinate system is sliced orthogonally by a six-layer (with sublamination of L5 into L5A and L5B) laminar convention that the empirical chapters use without further definition. In barrel cortex, paired-recording mapping of the C2 column established layer-dependent E→E connection probabilities and the layer-by-layer short-term-plasticity profile (depression at most layer pairs, presynaptic-L2 facilitation)...”
  12. [Hooks2011] paper:82e14b69-8c1b-41b8-b15b-f103a44caf3f “The same coordinate system is sliced orthogonally by a six-layer (with sublamination of L5 into L5A and L5B) laminar convention that the empirical chapters use without further definition. In barrel cortex, paired-recording mapping of the C2 column established layer-dependent E→E connection probabilities and the layer-by-layer short-term-plasticity profile (depression at most layer pairs, presynaptic-L2 facilitation)...”
  13. [Hooks2013] paper:fc06108f-75bb-4dd7-9d5e-3b006f8c4156 “The same coordinate system is sliced orthogonally by a six-layer (with sublamination of L5 into L5A and L5B) laminar convention that the empirical chapters use without further definition. In barrel cortex, paired-recording mapping of the C2 column established layer-dependent E→E connection probabilities and the layer-by-layer short-term-plasticity profile (depression at most layer pairs, presynaptic-L2 facilitation)...”
  14. [Yamawaki2014] paper:paper-a29242ac688f “The same coordinate system is sliced orthogonally by a six-layer (with sublamination of L5 into L5A and L5B) laminar convention that the empirical chapters use without further definition. In barrel cortex, paired-recording mapping of the C2 column established layer-dependent E→E connection probabilities and the layer-by-layer short-term-plasticity profile (depression at most layer pairs, presynaptic-L2 facilitation)...”
  15. [Weiler2023] paper:paper-604a12dad297 “The same coordinate system is sliced orthogonally by a six-layer (with sublamination of L5 into L5A and L5B) laminar convention that the empirical chapters use without further definition. In barrel cortex, paired-recording mapping of the C2 column established layer-dependent E→E connection probabilities and the layer-by-layer short-term-plasticity profile (depression at most layer pairs, presynaptic-L2 facilitation)...”
  16. [Brooks2025b] paper:paper-3678866fea0b “The same coordinate system is sliced orthogonally by a six-layer (with sublamination of L5 into L5A and L5B) laminar convention that the empirical chapters use without further definition. In barrel cortex, paired-recording mapping of the C2 column established layer-dependent E→E connection probabilities and the layer-by-layer short-term-plasticity profile (depression at most layer pairs, presynaptic-L2 facilitation)...”
  17. [Anastasiades2019] paper:paper-54d3b0c8acb7 “The same coordinate system is sliced orthogonally by a six-layer (with sublamination of L5 into L5A and L5B) laminar convention that the empirical chapters use without further definition. In barrel cortex, paired-recording mapping of the C2 column established layer-dependent E→E connection probabilities and the layer-by-layer short-term-plasticity profile (depression at most layer pairs, presynaptic-L2 facilitation)...”
  18. [DSouza2022] paper:paper-f962a8f32d6b “The same coordinate system is sliced orthogonally by a six-layer (with sublamination of L5 into L5A and L5B) laminar convention that the empirical chapters use without further definition. In barrel cortex, paired-recording mapping of the C2 column established layer-dependent E→E connection probabilities and the layer-by-layer short-term-plasticity profile (depression at most layer pairs, presynaptic-L2 facilitation)...”
  19. [Burkhalter2023] paper:paper-39de736d98ee “The same coordinate system is sliced orthogonally by a six-layer (with sublamination of L5 into L5A and L5B) laminar convention that the empirical chapters use without further definition. In barrel cortex, paired-recording mapping of the C2 column established layer-dependent E→E connection probabilities and the layer-by-layer short-term-plasticity profile (depression at most layer pairs, presynaptic-L2 facilitation)...”
  20. [Harris2014] paper:paper-94b8f136b9d7 “**Mouse cortical anatomy primer.** **Panel A**, dorsal areal map of mouse neocortex showing V1, A1, S1-barrel, M1, M2 / ALM, RSC, PPC and the higher visual areas (AM, PM, AL, LM, RL), with labels following Allen CCF / Harris-2019 conventions [Harris2019]. **Panel B**, a single cortical column with the six-layer + L5A / L5B convention used throughout the review, populated with example IT (blue), PT (red) and CT (gree...”
  21. [Prasad2020] paper:paper-161194bbea6a “The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...”
  22. [Zhang2021c] paper:paper-bbfc9a9ee9e9 “The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...”
  23. [Booeshaghi2021] paper:paper-9443e876ca93 “The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...”
  24. [MunozCastaneda2021] paper:paper-bfc35ebe6451 “The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...”
  25. [Peng2021] paper:paper-aa79acad2563 “The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...”
  26. [Peng2023] paper:paper-a3d3ed4b0b04 “The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...”
  27. [Scala2021] paper:paper-be132b319290 “The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...”
  28. [Gouwens2019] paper:paper-b9e0351c6ddd “The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...”
  29. [Sorensen2023] paper:paper-pm-38168270 “The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...”
  30. [Chen2019a] paper:paper-1bafe87bf289 “The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...”
  31. [Wheeler2023] paper:paper-5b3e1101bdd1 “The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...”
  32. [Hattox2007] paper:paper-4437b05140b3 “The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...”
  33. [Suter2013] paper:paper-8d1d6c42c552 “The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...”
  34. [Kiritani2012] paper:paper-e1291622a820 “The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...”
  35. [Tosches2018] paper:paper-2a4f611ebac8 “The single most useful shorthand in the empirical chapters is the three-class taxonomy of pyramidal projection neurons: intratelencephalic (IT) neurons that target other cortical areas (contralateral and ipsilateral) and striatum but not the thalamus or brainstem; pyramidal-tract (PT) neurons in L5B that target higher-order thalamus, brainstem and spinal cord; and corticothalamic (CT) neurons concentrated in L6 that...”
  36. [Economo2018] paper:26e8cc99-0f55-4025-8726-f07ea4d4a26a “Within the three top classes the resolution depends on the assay. Patch-seq morpho-electric features in mouse M1 do not cleanly separate the fine transcriptomic subtypes within a class [Scala2021], whereas a Patch-seq + whole-cell-morphology pipeline in V1 defines 16 integrated morpho-electric-transcriptomic (MET) types and 300 fully reconstructed excitatory morphologies [Sorensen2023] — this is the field's central...”
  37. [Tantirigama2016] paper:paper-89006181f9d5 “Within the three top classes the resolution depends on the assay. Patch-seq morpho-electric features in mouse M1 do not cleanly separate the fine transcriptomic subtypes within a class [Scala2021], whereas a Patch-seq + whole-cell-morphology pipeline in V1 defines 16 integrated morpho-electric-transcriptomic (MET) types and 300 fully reconstructed excitatory morphologies [Sorensen2023] — this is the field's central...”

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