Details

scope
mouse cortex and thalamus, Cre-line anterograde AAV tracing, Allen Mouse Brain Connectivity Atlas expansion
section_id
section_02
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_02_evidence_package.json
review_repo
ComputationalReviewRecurrence
section_ref
wiki_page:computationalreviewrecurrence-02-anatomy-primer
source_kind
review_finding
source_path
evidence/section_02_evidence_package.json
study_system
mouse cortex and thalamus, Cre-line anterograde AAV tracing, Allen Mouse Brain Connectivity Atlas expansion
section_title
2. Mouse-cortex anatomy primer — areal map, layer structure, projection-class nomenclature (IT / PT / CT), tools available for E→E dissection (paired patch, Cre lines, two-photon-targeted patch, optogenetics, EM reconstruction)
evidence_summary
About one thousand new anterograde AAV tracer experiments in mouse cortex and thalamus using Cre driver lines selective for layer/projection class.
review_bundle_ref
analysis_bundle:ab-d9c479db9be9
replication_status
replication_unknown
review_package_ref
analysis_bundle:ab-d9c479db9be9
source_artifact_ref
wiki_page:computationalreviewrecurrence-02-anatomy-primer
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_02_evidence_package.json
commit_sha
79ce062d54a924ce05953ec90aa9d26044d2b48f
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence
Raw fields (6)
claim_text
Cre-driver-line-based, layer- and projection-class-specific anterograde tracing across the mouse cortex and thalamus yields a connectivity model in which corticocortical, thalamocortical and corticothalamic projections form a shallow hierarchy of feedforward and feedback connections.
raw_fields
{
  "n": null,
  "doi": "10.1038/s41586-019-1716-z",
  "claim": "Cre-driver-line-based, layer- and projection-class-specific anterograde tracing across the mouse cortex and thalamus yields a connectivity model in which corticocortical, thalamocortical and corticothalamic projections form a shallow hierarchy of feedforward and feedback connections.",
  "cite_key": "Harris2019",
  "evidence": "About one thousand new anterograde AAV tracer experiments in mouse cortex and thalamus using Cre driver lines selective for layer/projection class.",
  "effect_size": null,
  "text_access": "abstract_only",
  "study_system": "mouse cortex and thalamus, Cre-line anterograde AAV tracing, Allen Mouse Brain Connectivity Atlas expansion",
  "argument_role": "supporting",
  "replication_status": "replication_unknown",
  "claim_source_sentence": "We have built a model to assign connection patterns between areas as either feedforward or feedback, and generated testable predictions of hierarchical positions for individual cortical and thalamic areas and for cortical network modules. Our results show that cell-class-specific connections are organized in a shallow hierarchy within the mouse corticothalamic network.",
  "source_provenance_status": "non_substring_match",
  "replication_evidence_dois": [],
  "effect_size_source_sentence": null
}
source_refs
[
  "paper:paper-259a50694faa"
]
source_span
We have built a model to assign connection patterns between areas as either feedforward or feedback, and generated testable predictions of hierarchical positions for individual cortical and thalamic areas and for cortical network modules. Our results show that cell-class-specific connections are organized in a shallow hierarchy within the mouse corticothalamic network.
evidence_refs
[
  {
    "ref": "paper:paper-259a50694faa"
  }
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "79ce062d54a924ce05953ec90aa9d26044d2b48f",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence"
}

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