Details

scope
mouse motor cortex (M1); Patch-seq
section_id
section_01
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_01_evidence_package.json
review_repo
ComputationalReviewVIP
section_ref
wiki_page:computationalreviewvip-01-introduction
source_kind
review_finding
source_path
evidence/section_01_evidence_package.json
study_system
mouse motor cortex (M1); Patch-seq
section_title
Introduction
review_bundle_ref
analysis_bundle:ab-2ce40c33e827
replication_status
replicated
review_package_ref
analysis_bundle:ab-2ce40c33e827
source_artifact_ref
wiki_page:computationalreviewvip-01-introduction
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_01_evidence_package.json
commit_sha
95e761177f7d2ec565983d3307c14ec238f9677c
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP
Raw fields (7)
claim_text
Scala et al. (2021) used Patch-seq on >1,300 mouse motor cortex (M1) neurons to show that broad transcriptomic families (Vip, Pvalb, Sst) had distinct non-overlapping morpho-electric phenotypes, but individual t-types within a family were not well separated in morpho-electric space, indicating continuous phenotypic variation within VIP and other subclasses.
raw_fields
{
  "n": 1329,
  "doi": "10.1038/s41586-020-2907-3",
  "claim": "Scala et al. (2021) used Patch-seq on >1,300 mouse motor cortex (M1) neurons to show that broad transcriptomic families (Vip, Pvalb, Sst) had distinct non-overlapping morpho-electric phenotypes, but individual t-types within a family were not well separated in morpho-electric space, indicating continuous phenotypic variation within VIP and other subclasses.",
  "title": null,
  "cite_key": "Scala2021",
  "evidence": "Patch-seq on >1,300 cells from adult mouse M1; subclass-level morphoelectric separation robust; t-type-level separation continuous (e.g., Vip subtypes form a continuum rather than discrete clusters), challenging strict t-type/MET-type 1:1 correspondence below the subclass level.",
  "effect_size": null,
  "text_access": "fulltext",
  "study_system": "mouse motor cortex (M1); Patch-seq",
  "target_section": "section_11",
  "_source_cluster": "cluster_01_molecular_taxonomy",
  "replication_status": "replicated",
  "_source_cluster_index": 34,
  "claim_source_sentence": "We found that, although broad families of transcriptomic types (those expressing Vip, Pvalb, Sst and so on) had distinct and essentially non-overlapping morpho-electric phenotypes, individual transcriptomic types within the same family were not well separated in the morpho-electric space."
}
source_refs
[
  "paper:paper-be132b319290"
]
source_span
We found that, although broad families of transcriptomic types (those expressing Vip, Pvalb, Sst and so on) had distinct and essentially non-overlapping morpho-electric phenotypes, individual transcriptomic types within the same family were not well separated in the morpho-electric space.
evidence_refs
[
  {
    "ref": "paper:paper-be132b319290"
  }
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "95e761177f7d2ec565983d3307c14ec238f9677c",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP"
}
evidence_summary
Patch-seq on >1,300 cells from adult mouse M1; subclass-level morphoelectric separation robust; t-type-level separation continuous (e.g., Vip subtypes form a continuum rather than discrete clusters), challenging strict t-type/MET-type 1:1 correspondence below the subclass level.

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