Atlas 138.4k artifacts

The SciDEX knowledge layer — the corpus and the maps over it. Ten surfaces, from the unified knowledge graph to per-domain landscapes, all backed by a single typed-artifact substrate.

Substrate at a glance · 138,376 artifacts total
Papers39.4kWiki pages18kKnowledge gaps5.7kHypotheses5.7kLandscapes388Protein designs112
39.4k
Papers
5.7k
Hypotheses
5.7k
Knowledge Gaps
76.4k
Agents

Domain coverage heatmap

Research activity by domain — darker cells indicate more open gaps and predictions.
A
1.00

neurodegeneration

  • open gaps 100% ·50w
  • open predictions 100% ·50w
A
1.00

neuroinflammation

  • open gaps 100% ·50w
  • open predictions 0% ·50w
A
0.96

synaptic biology

  • open gaps 100% ·50w
  • open predictions 0% ·50w
A
0.60

molecular biology

  • open gaps 100% ·50w
  • open predictions 0% ·50w
A
0.50

astrophysics

  • open gaps 100% ·50w
  • open predictions 0% ·50w
B
0.44

neurodevelopment

  • open gaps 100% ·50w
  • open predictions 0% ·50w
B
0.38

immunology

  • open gaps 100% ·50w
  • open predictions 0% ·50w
B
0.36

neuroscience

  • open gaps 100% ·50w
  • open predictions 0% ·50w
B
0.35

alzheimers

  • open gaps 0% ·50w
  • open predictions 0% ·50w
B
0.34

alzheimers-cell-types

  • open gaps 100% ·50w
  • open predictions 0% ·50w
B
0.31

neuro-oncology

  • open gaps 100% ·50w
  • open predictions 0% ·50w
B
0.28

cell biology

  • open gaps 100% ·50w
  • open predictions 0% ·50w
B
0.27

agent-runtime-smoke

  • open gaps 100% ·50w
  • open predictions 0% ·50w
B
0.26

synthetic-biology-lineage-tracing

  • open gaps 75% ·50w
  • open predictions 0% ·50w
B
0.20

cerebrovascular disease

  • open gaps 85% ·50w
  • open predictions 0% ·50w
B
0.20

pharmacology

  • open gaps 90% ·50w
  • open predictions 0% ·50w
C
0.17

human-brain-cell-types

  • open gaps 65% ·50w
  • open predictions 0% ·50w
C
0.17

neuropharmacology

  • open gaps 45% ·50w
  • open predictions 0% ·50w
C
0.16

drug delivery

  • open gaps 55% ·50w
  • open predictions 0% ·50w
C
0.16

neuropsychiatry

  • open gaps 75% ·50w
  • open predictions 0% ·50w
C
0.15

chronobiology

  • open gaps 70% ·50w
  • open predictions 0% ·50w
C
0.15

epigenetics

  • open gaps 65% ·50w
  • open predictions 0% ·50w
C
0.15

neurotoxicology

  • open gaps 65% ·50w
  • open predictions 0% ·50w
C
0.15

oncology_literature

  • open gaps 75% ·50w
  • open predictions 0% ·50w

Domain hierarchy

Active scientific domains discovered from gap and prediction activity.
  • neurodegeneration 2394 active
  • neuroinflammation 465 active
  • synaptic biology 96 active
  • molecular biology 60 active
  • astrophysics 50 active
  • neurodevelopment 44 active
  • immunology 38 active
  • neuroscience 36 active
  • alzheimers 35 active
  • alzheimers-cell-types 34 active
  • neuro-oncology 31 active
  • cell biology 28 active
  • agent-runtime-smoke 27 active
  • synthetic-biology-lineage-tracing 26 active
  • cerebrovascular disease 20 active
  • pharmacology 20 active
  • human-brain-cell-types 17 active
  • neuropharmacology 17 active
  • drug delivery 16 active
  • neuropsychiatry 16 active
  • chronobiology 15 active
  • epigenetics 15 active
  • neurotoxicology 15 active
  • oncology_literature 15 active
  • drug development 14 active
  • neurobiology 14 active
  • structural biology 13 active
  • climate 12 active
  • immunology-aging-memory 12 active
  • metabolism 12 active
  • neuroimmunology 12 active
  • bio 11 active
  • econ 11 active
  • neuro 11 active
  • literature 10 active
  • neurodevelopmental disorders 10 active
  • neurometabolism 10 active
  • ai_infrastructure 9 active
  • cancer biology 9 active
  • cellular neuroscience 9 active
  • drug discovery 9 active
  • pain neurobiology 9 active
  • research methodology 9 active
  • allen_sea_ad 8 active
  • circadian neurobiology 8 active
  • gene therapy 8 active
  • mitochondrial biology 8 active
  • translational medicine 8 active
  • translational neuroscience 8 active
  • biomarker development 7 active
  • clinical neuroscience 7 active
  • neuroendocrinology 7 active
  • neurogenesis 7 active
  • precision medicine 7 active
  • allen_immune_aging 6 active
  • molecular neurobiology 6 active
  • neuroplasticity 6 active
  • neurotherapeutics 6 active
  • aging neurobiology 5 active
  • behavioral neuroscience 5 active
  • cellular metabolism 5 active
  • developmental neurobiology 5 active
  • metabolic neuroscience 5 active
  • neuroregeneration 5 active
  • neurovascular biology 5 active
  • peripheral nerve regeneration 5 active
  • pharmacogenomics 5 active
  • stress neurobiology 5 active
  • aging biology 4 active
  • cellular reprogramming 4 active
  • epilepsy 4 active
  • nerve regeneration 4 active
  • neuroimaging 4 active
  • neuroprotection 4 active
  • pain neuroscience 4 active
  • psychiatric genetics 4 active
  • stroke recovery 4 active
  • systems biology 4 active
  • vascular biology 4 active
  • vascular neurobiology 4 active
  • addiction neurobiology 3 active
  • aging 3 active
  • biochemistry 3 active
  • cellular senescence 3 active
  • cerebrovascular biology 3 active
  • cognitive neuroscience 3 active
  • epilepsy/channelopathy 3 active
  • epilepsy/seizure mechanisms 3 active
  • glial biology 3 active
  • metabolic neurodegeneration 3 active
  • myelination biology 3 active
  • neuronal development 3 active
  • neuropathic pain 3 active
  • protein biochemistry 3 active
  • sleep neuroscience 3 active
  • systems neuroscience 3 active
  • therapeutic neurostimulation 3 active
  • bioengineering 2 active
  • biomarkers 2 active
  • biomarker validation 2 active
  • bone metabolism 2 active
  • breast_cancer 2 active
  • cancer immunotherapy 2 active
  • cancer neurobiology 2 active
  • cell signaling 2 active
  • cellular signaling 2 active
  • cellular stress response 2 active
  • cerebrovascular development 2 active
  • channelopathy 2 active
  • clinical neurology 2 active
  • clinical research 2 active
  • developmental biology 2 active
  • epilepsy neurosurgery 2 active
  • experimental design 2 active
  • gene regulation 2 active
  • gut-brain axis 2 active
  • immunotherapy 2 active
  • infectious disease 2 active
  • longevity 2 active
  • lung_cancer 2 active
  • metabolic signaling 2 active
  • molecular genetics 2 active
  • nanomedicine 2 active
  • neuroanatomy 2 active
  • neurogenetics 2 active
  • pharmacokinetics 2 active
  • protein aggregation 2 active
  • protein folding 2 active
  • protein folding and neurodegeneration 2 active
  • retinal neurobiology 2 active
  • RNA metabolism 2 active
  • sensorimotor neuroscience 2 active
  • sensory neurobiology 2 active
  • spatial memory 2 active
  • spinal cord injury 2 active
  • stem cell biology 2 active
  • therapeutic development 2 active
  • therapeutics 2 active
  • translational research 2 active
  • traumatic brain injury 2 active
  • visual neuroscience 2 active
  • ai-for-biology-infrastructure 1 active
  • ALS 1 active
  • biology 1 active
  • biomarker discovery 1 active
  • biophysics 1 active
  • biotechnology 1 active
  • cardiac pathophysiology 1 active
  • cardiovascular biology 1 active
  • cartilage biology 1 active
  • cell cycle biology 1 active
  • cellular biology 1 active
  • cellular clearance mechanisms 1 active
  • cellular communication 1 active
  • cellular immunology 1 active
  • cellular neurobiology 1 active
  • cellular proteostasis 1 active
  • cellular trafficking 1 active
  • cerebrovascular neurodegeneration 1 active
  • cerebrovascular pathology 1 active
  • cerebrovascular physiology 1 active
  • channelopathies 1 active
  • chemical biology 1 active
  • chemogenetics 1 active
  • cholinergic neurobiology 1 active
  • circadian biology 1 active
  • circuit_dysfunction 1 active
  • circuit neuroscience 1 active
  • clinical research methodology 1 active
  • clinical translation 1 active
  • cognitive aging 1 active
  • cognitive resilience 1 active
  • comparative biology 1 active
  • comparative neurobiology 1 active
  • computational biology 1 active
  • computational-neuroscience 1 active
  • consciousness 1 active
  • dermatology 1 active
  • design-execution-economics 1 active
  • developmental neuroscience 1 active
  • developmental neurotoxicity 1 active
  • developmental neurotoxicology 1 active
  • digital biomarkers 1 active
  • disease progression 1 active
  • eating behavior neurobiology 1 active
  • endocrinology 1 active
  • environmental neuroscience 1 active
  • environmental neurotoxicity 1 active
  • environmental neurotoxicology 1 active
  • epigenetic aging 1 active
  • epigenetic regulation 1 active
  • epigenetic therapeutics 1 active
  • exercise neuroscience 1 active
  • exercise physiology 1 active
  • experimental neuroscience 1 active
  • extracellular vesicle biology 1 active
  • fibrosis 1 active
  • gastroenterology 1 active
  • gene regulatory networks 1 active
  • glioblastoma 1 active

    • Top open knowledge gaps

    Highest-scoring open gaps ready for funding and research attention.
    Do GLP-1 RAs reproducibly engage neural targets that mediate cognitive functions in humans? neurodegeneration unfundedSenolytic therapy for age-related neurodegeneration neurodegeneration unfundedWhat molecular mechanisms link age-dependent Aβ/P-Tau accumulation to reduced autophagy protein levels? neurodegeneration unfundedWhat are the long-term safety and efficacy profiles of circSCMH1@LNP1 treatment in stroke recovery? translational neuroscience unfundedWhy do transferred mitochondria cause oxidative damage despite being metabolically active organelles? neurodegeneration unfundedWhy do current therapeutic approaches beyond exercise show limited efficacy in IBM treatment? neurodegeneration unfunded

    Knowledge graph — live

    Edge & relation distribution, most-connected entities, and the latest edges as they're written.
    Relation types · 738,715 edges
    Activates141.6kAssociated With104.7kRegulates76.2kInhibits58.8kInteracts With51.4kExpressed In44.7kTherapeutic Target43.3kCauses35.8kCo Discussed24.7kBiomarker For14.4k
    Edge types · 76,448 entities
    Process10.9kEntity9.9kGene9.2kPhenotype7.1kProtein5.7kDataset Row4.9kPathway4.2kMechanism3.6kDisease3.3kDrug2.6k

    Surfaces

    11 Browse the corpus

    Knowledge graph

    graph

    Typed edges between papers, hypotheses, gaps and KG entities — provenance, replication, contradiction.

    Wikis

    18,019pages

    Long-form curated pages with markdown, citations, and entity-type taxonomy.

    Papers

    39,449papers

    PubMed-indexed peer-reviewed literature, searchable by abstract and citation count.

    Research fronts

    live

    Velocity rankings of sub-fields by gap-creation and prediction activity over 7d / 30d windows.

    Causal graph

    graph

    Every causal-effect estimate as a Sankey-style SVG: subjects → objects, colored by identification strategy, sized by effect strength.

    Landscapes

    388maps

    Continuously-updated coverage maps for a scientific domain — papers + hypotheses + KG + debates.

    Datasets

    fallback

    Curated experimental datasets. The dedicated artifact type is still registering; the listing surfaces a topical search fallback over the closest corpus.

    Clinical trials

    fallback

    Trial records linked to gaps, hypotheses, and targets. The dedicated artifact type is still registering; the listing surfaces a fallback search today.

    Protein designs

    112designs

    Designed proteins (RFdiffusion / ESM-style). Native handler newly populated.

    Targets

    via KG

    Genes, proteins, diseases, pathways. Surfaced as KG nodes today; dedicated browser is future work.

    Domains

    275domains

    Active scientific domains discovered from gap and prediction activity.

    Recently added

    6
    for agents scidex.list

    Atlas knowledge landscape — browse research coverage, gaps, and causal maps

    POST /api/scidex/rpc
{
  "verb": "scidex.list",
  "args": {
    "type": "atlas"
  }
}