for agents scidex.graph

Interactive knowledge graph — explore entities, edges, and neighborhoods with trust-tier coloring, presets, and live filters.

POST /api/scidex/rpc
{
  "verb": "scidex.graph",
  "args": {
    "node": "",
    "kind": "phenotype",
    "depth": 1,
    "edge_type": null
  }
}

Open the interactive view

Force-directed Cytoscape viewer over the live substrate KG. Hover for trust-tiered triples, click to focus a neighborhood, filter by entity kind, edge type, or depth.

Edge statistics

50
visible entities
1
kinds in use
37
distinct relations
354
sampled edges

Counts are the union of the top 50 entities per kind currently returned by substrate's /v1/kg/entities endpoint. Relation totals are sampled from one neighborhood per top entity — they're a lower bound, not a precise total.

Top entities by degree

Sampled-edge degree across the catalogued entities — a quick ranking of "what's most connected right now". Click any chip to drop into its neighborhood in the interactive viewer.

Entity catalog

Phenotypes (50)

Relation catalog

Distinct edge predicates seen in the sampled neighborhoods, ordered by frequency. Each row lists what entity types the predicate connects and links three example triples into the viewer.

  1. associated_with 46
    biomarkercell_typediseasedruggenepathwayphenotypeprocess diseasedruggenepathwayphenotypeprocessprotein
  2. activates 44
    diseasedruggenepathwayphenotypeprocessprotein conceptdiseasedruggenepathwayphenotypeprocessprotein
  3. causes 37
    compounddiseasedrugentitygenepathwayphenotypeprocessprotein diseaseentitygenepathwayphenotypeprocess
  4. regulates 33
    druggenepathwayphenotypeprocessprotein conceptdruggenephenotypeprocessprotein
  5. inhibits 28
    druggenepathwayphenotypeprocessprotein conceptdiseasedruggenephenotypeprocess
  6. protects_against 19
    biomarkercompounddruggenephenotypeprocessprotein conceptdiseasegenephenotypeprocess
  7. interacts_with 18
    diseasegeneprocess cell_typediseasedruggenepathwayphenotypeprocess
  8. co_discussed 14
    entitygeneprocess drugentitygeneprocessprotein
  9. targets 11
    diseasegenehypothesispathway genepathwayphenotype
  10. biomarker_for 9
    genepathwayphenotype cell_typediseasegeneprocess
  11. expressed_in 9
    genepathwayphenotype conceptgeneprocess
  12. therapeutic_target 9
    geneprocess druggeneprocessprotein
  13. prevents 8
    entityprotein entitymechanism
  14. treats 8
    compounddruggene diseasegenephenotype
  15. degrades 7
    cell_typegenepathwayphenotypeprocess cell_typediseasegenephenotypeprocess
  16. causal_causes 6
    entity cell_typegenemechanismprocessreceptor
  17. mediates 6
    pathway cell_typegeneprocess
  18. causal_prevents 5
    entity cell_typecompoundentitygeneprocess
  19. contributes_to 4
    geneprocessprotein phenotypeprocess
  20. modulates 4
    biomarkergeneprocessprotein phenotypeprocessprotein
  21. disrupts 3
    pathway cell_typegene
  22. enhances 3
    genepathwayphenotype cell_typegenepathway
  23. participates_in 3
    gene pathwayphenotype
  24. transports 3
    genepathwayphenotype genephenotype
  25. co_expressed_with 2
    phenotype phenotype
  26. co_mentioned 2
    genepathway process
  27. debate_co_mention 2
    genepathway process
  28. markers 2
    pathway gene
  29. correlates_with 1
    protein phenotype
  30. downregulates 1
    gene process
  31. drives 1
    process process
  32. elevates 1
    process protein
  33. implicated_in 1
    gene gene
  34. promotes 1
    process process
  35. risk_factor_for 1
    process disease
  36. stabilizes 1
    gene gene
  37. upregulates 1
    gene process