Details

scope
mouse primary visual cortex (V1), Patch-seq
section_id
section_01
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_01_evidence_package.json
review_repo
ComputationalReviewRecurrence
section_ref
wiki_page:computationalreviewrecurrence-01-introduction
source_kind
review_finding
source_path
evidence/section_01_evidence_package.json
study_system
mouse primary visual cortex (V1), Patch-seq
section_title
1. Introduction — what "excitatory recurrence" means operationally in mouse cortex, and why isolating it from inhibition and from clinical framings is a defensible analytic move for basic-research synthesis
evidence_summary
Patch-seq pipeline yielding morphology, intrinsic physiology, and full-length transcriptomes from the same neurons in mouse V1.
review_bundle_ref
analysis_bundle:ab-d9c479db9be9
replication_status
replication_unknown
review_package_ref
analysis_bundle:ab-d9c479db9be9
source_artifact_ref
wiki_page:computationalreviewrecurrence-01-introduction
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_01_evidence_package.json
commit_sha
79ce062d54a924ce05953ec90aa9d26044d2b48f
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence
Raw fields (6)
claim_text
Integrated morphoelectric + transcriptomic Patch-seq classification of mouse cortical GABAergic interneurons demonstrates that distinct definitions of cell type (transcriptomic, morphological, electrophysiological) are converging but the field has not yet settled on a single consensus type count.
raw_fields
{
  "n": null,
  "doi": "10.1016/j.cell.2020.09.057",
  "claim": "Integrated morphoelectric + transcriptomic Patch-seq classification of mouse cortical GABAergic interneurons demonstrates that distinct definitions of cell type (transcriptomic, morphological, electrophysiological) are converging but the field has not yet settled on a single consensus type count.",
  "cite_key": "Gouwens2020",
  "evidence": "Patch-seq pipeline yielding morphology, intrinsic physiology, and full-length transcriptomes from the same neurons in mouse V1.",
  "effect_size": null,
  "text_access": "fulltext",
  "study_system": "mouse primary visual cortex (V1), Patch-seq",
  "argument_role": "supporting",
  "replication_status": "replication_unknown",
  "claim_source_sentence": "Despite the diversity and amount of data collected and analyzed to this point, the field has not readily converged on a consensus number, or even definition, of neuronal cell types; indeed, efforts to determine a consensus number of cell types have been limited by well-documented challenges.",
  "source_provenance_status": "ok",
  "replication_evidence_dois": [],
  "effect_size_source_sentence": null
}
source_refs
[
  "paper:paper-pm-33186530"
]
source_span
Despite the diversity and amount of data collected and analyzed to this point, the field has not readily converged on a consensus number, or even definition, of neuronal cell types; indeed, efforts to determine a consensus number of cell types have been limited by well-documented challenges.
evidence_refs
[
  {
    "ref": "paper:paper-pm-33186530"
  }
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "79ce062d54a924ce05953ec90aa9d26044d2b48f",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence"
}

Voting as anonymous. Sign in to attribute your signals.

tokens

Replication

No replications yet

Discussion

Posting anonymously. Sign in for attribution.

No comments yet — be the first.