Details
- scope
- mouse VISp + ALM Patch-seq; transcriptomic taxonomy
- claim_text
- In mouse VISp, the GABAergic taxonomy comprises four classical subclasses (Pvalb, Sst, Vip, Htr3a+/Vip-) plus an additional Sncg subclass that transcriptomically bridges Vip and Lamp5 (renamed from Htr3a+/Vip-).
- section_id
- section_05
- source_url
- https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_05_evidence_package.json
- effect_size
- 5 GABAergic subclasses identified (Pvalb, Sst, Vip, Lamp5, Sncg)
- review_repo
- ComputationalReviewVIP
- section_ref
- wiki_page:computationalreviewvip-05-electrophysiology
- source_kind
- review_finding
- source_path
- evidence/section_05_evidence_package.json
- study_system
- mouse VISp + ALM Patch-seq; transcriptomic taxonomy
- section_title
- Intrinsic Electrophysiology
- evidence_summary
- Patch-seq + scRNA-seq integration across VISp and ALM, n=2,955 cells with consistent t-type assignment
- review_bundle_ref
- analysis_bundle:ab-2ce40c33e827
- replication_status
- replicated
- review_package_ref
- analysis_bundle:ab-2ce40c33e827
- source_artifact_ref
- wiki_page:computationalreviewvip-05-electrophysiology
- origin_url
- https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_05_evidence_package.json
- commit_sha
- 95e761177f7d2ec565983d3307c14ec238f9677c
- created_by
- persona-jerome-lecoq-gbo-neuroscience
- repository_url
- https://github.com/AllenNeuralDynamics/ComputationalReviewVIP
Raw fields (5)
- raw_fields
{ "n": 2955, "doi": "10.1016/j.cell.2020.09.057", "claim": "In mouse VISp, the GABAergic taxonomy comprises four classical subclasses (Pvalb, Sst, Vip, Htr3a+/Vip-) plus an additional Sncg subclass that transcriptomically bridges Vip and Lamp5 (renamed from Htr3a+/Vip-).", "title": null, "cite_key": "Gouwens2020a", "evidence": "Patch-seq + scRNA-seq integration across VISp and ALM, n=2,955 cells with consistent t-type assignment", "effect_size": "5 GABAergic subclasses identified (Pvalb, Sst, Vip, Lamp5, Sncg)", "text_access": "fulltext", "study_system": "mouse VISp + ALM Patch-seq; transcriptomic taxonomy", "_source_cluster": "cluster_04_intrinsic_electrophysiology", "replication_status": "replicated", "_source_cluster_index": 27, "claim_source_sentence": "Our recent single-cell transcriptomic study of two mouse cortical areas (Tasic et al., 2018), VISp and anterolateral motor cortex (ALM), confirmed these four major subclasses and revealed an additional subclass (Sncg) that is related to the Vip and Htr3a+/Vip-(renamed to Lamp5) subclasses.", "replication_evidence_dois": [ "10.1038/s41586-021-03950-0", "10.1038/s41586-021-03465-8" ], "effect_size_source_sentence": "Our recent single-cell transcriptomic study of two mouse cortical areas (Tasic et al., 2018), VISp and anterolateral motor cortex (ALM), confirmed these four major subclasses and revealed an additional subclass (Sncg) that is related to the Vip and Htr3a+/Vip-(renamed to Lamp5) subclasses." }- source_refs
[ "paper:paper-pm-33186530" ]
- source_span
Our recent single-cell transcriptomic study of two mouse cortical areas (Tasic et al., 2018), VISp and anterolateral motor cortex (ALM), confirmed these four major subclasses and revealed an additional subclass (Sncg) that is related to the Vip and Htr3a+/Vip-(renamed to Lamp5) subclasses.
- evidence_refs
[ { "ref": "paper:paper-pm-33186530" } ]- source_policy
{ "mode": "public_source_pointer_with_short_context", "notes": [ "Local review repositories are read-only inputs.", "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose." ], "source_commit_sha": "95e761177f7d2ec565983d3307c14ec238f9677c", "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP" }