Details

scope
rodent S1 cortex; biophysical microcircuit modeling
section_id
section_02
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_02_evidence_package.json
review_repo
ComputationalReviewVIP
section_ref
wiki_page:computationalreviewvip-02-classification
source_kind
review_finding
source_path
evidence/section_02_evidence_package.json
study_system
rodent S1 cortex; biophysical microcircuit modeling
section_title
Molecular Identity and Transcriptomic Taxonomy
evidence_summary
Multi-layer microcircuit model fitted to in vivo cell-type-specific firing rates; STP version added to test predictions.
review_bundle_ref
analysis_bundle:ab-2ce40c33e827
replication_status
replication_unknown
review_package_ref
analysis_bundle:ab-2ce40c33e827
source_artifact_ref
wiki_page:computationalreviewvip-02-classification
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_02_evidence_package.json
commit_sha
95e761177f7d2ec565983d3307c14ec238f9677c
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP
Raw fields (6)
claim_text
A multi-layer biophysical model of rodent somatosensory cortex incorporating PV/SOM/VIP interneurons with cell-type-specific short-term plasticity reproduces in vivo population firing-rate data, captures PV/SOM-mediated inhibition and VIP-mediated disinhibition of excitatory cells, and predicts that STP modulates response magnitudes by switching the dominant inhibitory pathway.
raw_fields
{
  "n": null,
  "doi": "10.1093/cercor/bhae378",
  "claim": "A multi-layer biophysical model of rodent somatosensory cortex incorporating PV/SOM/VIP interneurons with cell-type-specific short-term plasticity reproduces in vivo population firing-rate data, captures PV/SOM-mediated inhibition and VIP-mediated disinhibition of excitatory cells, and predicts that STP modulates response magnitudes by switching the dominant inhibitory pathway.",
  "title": null,
  "cite_key": "Jiang2024b",
  "evidence": "Multi-layer microcircuit model fitted to in vivo cell-type-specific firing rates; STP version added to test predictions.",
  "effect_size": null,
  "text_access": "abstract_only",
  "study_system": "rodent S1 cortex; biophysical microcircuit modeling",
  "target_section": "section_05",
  "_source_cluster": "cluster_01_molecular_taxonomy",
  "replication_status": "replication_unknown",
  "_source_cluster_index": 105,
  "claim_source_sentence": "The model reproduces the experimentally observed inhibitory effects of PV and SOM cells and disinhibitory effect of VIP cells on excitatory cells. We further create a version of the model incorporating cell-type-specific short-term synaptic plasticity (STP). While the ongoing activity with and without STP is similar, STP modulates the responses of Exc, SOM, and VIP cells to cell-type-specific stimulation, presumably by changing the dominant inhibitory pathways.",
  "replication_evidence_dois": [],
  "effect_size_source_sentence": null
}
source_refs
[
  "paper:paper-8797c32e2132"
]
source_span
The model reproduces the experimentally observed inhibitory effects of PV and SOM cells and disinhibitory effect of VIP cells on excitatory cells. We further create a version of the model incorporating cell-type-specific short-term synaptic plasticity (STP). While the ongoing activity with and without STP is similar, STP modulates the responses of Exc, SOM, and VIP cells to cell-type-specific stimulation, presumably...
evidence_refs
[
  {
    "ref": "paper:paper-8797c32e2132"
  }
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "95e761177f7d2ec565983d3307c14ec238f9677c",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP"
}

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