Details

scope
mouse whole nervous system; 10x scRNA-seq
section_id
section_02
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_02_evidence_package.json
review_repo
ComputationalReviewVIP
section_ref
wiki_page:computationalreviewvip-02-classification
source_kind
review_finding
source_path
evidence/section_02_evidence_package.json
study_system
mouse whole nervous system; 10x scRNA-seq
section_title
Molecular Identity and Transcriptomic Taxonomy
review_bundle_ref
analysis_bundle:ab-2ce40c33e827
replication_status
replicated
review_package_ref
analysis_bundle:ab-2ce40c33e827
source_artifact_ref
wiki_page:computationalreviewvip-02-classification
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_02_evidence_package.json
commit_sha
95e761177f7d2ec565983d3307c14ec238f9677c
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP
Raw fields (7)
claim_text
Zeisel et al. (2018) profiled the mouse nervous system at single-cell resolution and discovered cell-type organization is governed by three overlapping principles: major class, developmental origin, and neurotransmitter type, with cortical Vip/Sst/Pvalb interneurons defining a major branch of GABAergic CGE/MGE-derived telencephalic interneurons.
raw_fields
{
  "n": 509876,
  "doi": "10.1016/j.cell.2018.06.021",
  "claim": "Zeisel et al. (2018) profiled the mouse nervous system at single-cell resolution and discovered cell-type organization is governed by three overlapping principles: major class, developmental origin, and neurotransmitter type, with cortical Vip/Sst/Pvalb interneurons defining a major branch of GABAergic CGE/MGE-derived telencephalic interneurons.",
  "title": null,
  "cite_key": "Zeisel2018",
  "evidence": "scRNA-seq of 509,876 cells across mouse nervous system; hierarchical taxonomy with cortical interneurons forming distinct subclasses by marker (Vip, Sst, Pvalb) within developmental origin, validating cardinal interneuron classification at whole-nervous-system scale.",
  "effect_size": null,
  "text_access": "fulltext",
  "study_system": "mouse whole nervous system; 10x scRNA-seq",
  "target_section": "section_02",
  "_source_cluster": "cluster_01_molecular_taxonomy",
  "replication_status": "replicated",
  "_source_cluster_index": 25,
  "claim_source_sentence": "The resulting arrangement of cell types revealed that the mammalian nervous system is organized according to three overlapping and interacting principles: major class (e.g., neurons, astrocytes), developmental origin (e.g., telencephalon, diencephalon, midbrain, hindbrain) and neurotransmitter type."
}
source_refs
[
  "paper:paper-063a15662345"
]
source_span
The resulting arrangement of cell types revealed that the mammalian nervous system is organized according to three overlapping and interacting principles: major class (e.g., neurons, astrocytes), developmental origin (e.g., telencephalon, diencephalon, midbrain, hindbrain) and neurotransmitter type.
evidence_refs
[
  {
    "ref": "paper:paper-063a15662345"
  }
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "95e761177f7d2ec565983d3307c14ec238f9677c",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP"
}
evidence_summary
scRNA-seq of 509,876 cells across mouse nervous system; hierarchical taxonomy with cortical interneurons forming distinct subclasses by marker (Vip, Sst, Pvalb) within developmental origin, validating cardinal interneuron classification at whole-nervous-system scale.

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