Yao et al. (2021) identified the Vip subclass as comprising six supertypes with…

Details

scope: mouse isocortex+HPF; 10x scRNA-seq
claim_text: Yao et al. (2021) identified the Vip subclass as comprising six supertypes within the CGE neighborhood of mouse isocortex+HPF, with additional Vip-related supertypes (e.g., Vip Cbln4 HPF) restricted to hippocampal formation.
section_id: section_02
source_url: https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_02_evidence_package.json
review_repo: ComputationalReviewVIP
section_ref: wiki_page:computationalreviewvip-02-classification
source_kind: review_finding
source_path: evidence/section_02_evidence_package.json
source_span: In the CGE neighborhood, the Lamp5 (mostly neurogliaform cells), Sncg and Vip subclasses are divided into 4, 5 (one containing Vip cells), and 6 supertypes, respectively.
study_system: mouse isocortex+HPF; 10x scRNA-seq
section_title: Molecular Identity and Transcriptomic Taxonomy
evidence_summary: Vip subclass partitions into 6 supertypes (further into ~30 clusters); HPF-specific Vip Cbln4 supertype unique to hippocampus, Qrfpr+ clusters within Vip Cbln4 HPF marked by CA3-related expression.
review_bundle_ref: analysis_bundle:ab-2ce40c33e827
replication_status: replicated
review_package_ref: analysis_bundle:ab-2ce40c33e827
source_artifact_ref: wiki_page:computationalreviewvip-02-classification
origin_url: https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_02_evidence_package.json
commit_sha: 95e761177f7d2ec565983d3307c14ec238f9677c
created_by: persona-jerome-lecoq-gbo-neuroscience
repository_url: https://github.com/AllenNeuralDynamics/ComputationalReviewVIP

Raw fields (4)

raw_fields

{
  "n": null,
  "doi": "10.1016/j.cell.2021.04.021",
  "claim": "Yao et al. (2021) identified the Vip subclass as comprising six supertypes within the CGE neighborhood of mouse isocortex+HPF, with additional Vip-related supertypes (e.g., Vip Cbln4 HPF) restricted to hippocampal formation.",
  "title": null,
  "cite_key": "Yao2021a",
  "evidence": "Vip subclass partitions into 6 supertypes (further into ~30 clusters); HPF-specific Vip Cbln4 supertype unique to hippocampus, Qrfpr+ clusters within Vip Cbln4 HPF marked by CA3-related expression.",
  "effect_size": null,
  "text_access": "fulltext",
  "study_system": "mouse isocortex+HPF; 10x scRNA-seq",
  "target_section": "section_02",
  "_source_cluster": "cluster_01_molecular_taxonomy",
  "replication_status": "replicated",
  "_source_cluster_index": 8,
  "claim_source_sentence": "In the CGE neighborhood, the Lamp5 (mostly neurogliaform cells), Sncg and Vip subclasses are divided into 4, 5 (one containing Vip cells), and 6 supertypes, respectively."
}

source_refs

[
  "paper:paper-4dfe44516146"
]

evidence_refs

[
  {
    "ref": "paper:paper-4dfe44516146"
  }
]

source_policy

{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "95e761177f7d2ec565983d3307c14ec238f9677c",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP"
}

Yao et al. (2021) identified the Vip subclass as comprising six supertypes with…

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Replication

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