Details

scope
human and mouse L1 cortex; Patch-seq + cross-species transcriptomic alignment
section_id
section_02
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_02_evidence_package.json
review_repo
ComputationalReviewVIP
section_ref
wiki_page:computationalreviewvip-02-classification
source_kind
review_finding
source_path
evidence/section_02_evidence_package.json
study_system
human and mouse L1 cortex; Patch-seq + cross-species transcriptomic alignment
section_title
Molecular Identity and Transcriptomic Taxonomy
evidence_summary
Cross-species Patch-seq comparison of L1 cortical interneurons; human VIP PCDH20 and SST BAGE2 t-types absent from mouse L1; L1 VIP TSPAN12 cells share descending axon collaterals + stellate dendrites + high sag conserved across species.
review_bundle_ref
analysis_bundle:ab-2ce40c33e827
replication_status
replicated
review_package_ref
analysis_bundle:ab-2ce40c33e827
source_artifact_ref
wiki_page:computationalreviewvip-02-classification
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_02_evidence_package.json
commit_sha
95e761177f7d2ec565983d3307c14ec238f9677c
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP
Raw fields (6)
claim_text
Jorstad et al. (2023) identified human-specific L1 interneuron transcriptomic types (e.g., VIP PCDH20 and SST BAGE2) that are homologous to deeper mouse t-types but exhibit no morphologically equivalent neurons in mouse L1, indicating type-specific divergence across species.
raw_fields
{
  "n": null,
  "doi": "10.1126/science.adf0805",
  "claim": "Jorstad et al. (2023) identified human-specific L1 interneuron transcriptomic types (e.g., VIP PCDH20 and SST BAGE2) that are homologous to deeper mouse t-types but exhibit no morphologically equivalent neurons in mouse L1, indicating type-specific divergence across species.",
  "title": null,
  "cite_key": "Chartrand2023",
  "evidence": "Cross-species Patch-seq comparison of L1 cortical interneurons; human VIP PCDH20 and SST BAGE2 t-types absent from mouse L1; L1 VIP TSPAN12 cells share descending axon collaterals + stellate dendrites + high sag conserved across species.",
  "effect_size": null,
  "text_access": "fulltext",
  "study_system": "human and mouse L1 cortex; Patch-seq + cross-species transcriptomic alignment",
  "target_section": "section_02",
  "_source_cluster": "cluster_01_molecular_taxonomy",
  "replication_status": "replicated",
  "_source_cluster_index": 18,
  "claim_source_sentence": "No mouse L1 neurons had morphologies resembling the unmatched human L1 t-types (VIP PCDH20 and SST BAGE12, homologous to deeper mouse t-types), and the MC4R subclass was less morphologically distinct, providing evidence for type-specific divergence across species."
}
source_refs
[
  "paper:paper-86dac47be132"
]
source_span
No mouse L1 neurons had morphologies resembling the unmatched human L1 t-types (VIP PCDH20 and SST BAGE12, homologous to deeper mouse t-types), and the MC4R subclass was less morphologically distinct, providing evidence for type-specific divergence across species.
evidence_refs
[
  {
    "ref": "paper:paper-86dac47be132"
  }
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "95e761177f7d2ec565983d3307c14ec238f9677c",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP"
}

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