Details

scope
mouse isocortex and hippocampal formation, single-cell RNA-seq taxonomy
section_id
section_01
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_01_evidence_package.json
review_repo
ComputationalReviewRecurrence
section_ref
wiki_page:computationalreviewrecurrence-01-introduction
source_kind
review_finding
source_path
evidence/section_01_evidence_package.json
study_system
mouse isocortex and hippocampal formation, single-cell RNA-seq taxonomy
section_title
1. Introduction — what "excitatory recurrence" means operationally in mouse cortex, and why isolating it from inhibition and from clinical framings is a defensible analytic move for basic-research synthesis
evidence_summary
Droplet-based single-cell RNA-seq of ~1.3 million adult mouse cells covering the entire isocortex and hippocampal formation.
review_bundle_ref
analysis_bundle:ab-d9c479db9be9
replication_status
replication_unknown
review_package_ref
analysis_bundle:ab-d9c479db9be9
source_artifact_ref
wiki_page:computationalreviewrecurrence-01-introduction
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_01_evidence_package.json
commit_sha
79ce062d54a924ce05953ec90aa9d26044d2b48f
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence
Raw fields (6)
claim_text
A whole-isocortex single-cell transcriptomic atlas of ~1.3 million cells defines a taxonomy of glutamatergic and GABAergic neuron types across the adult mouse isocortex and hippocampal formation, with large-scale continuous and graded variations of cell types along isocortical depth and across the cortical sheet.
raw_fields
{
  "n": "~1.3 million cells profiled",
  "doi": "10.1016/j.cell.2021.04.021",
  "claim": "A whole-isocortex single-cell transcriptomic atlas of ~1.3 million cells defines a taxonomy of glutamatergic and GABAergic neuron types across the adult mouse isocortex and hippocampal formation, with large-scale continuous and graded variations of cell types along isocortical depth and across the cortical sheet.",
  "cite_key": "Yao2021a",
  "evidence": "Droplet-based single-cell RNA-seq of ~1.3 million adult mouse cells covering the entire isocortex and hippocampal formation.",
  "effect_size": null,
  "text_access": "abstract_only",
  "study_system": "mouse isocortex and hippocampal formation, single-cell RNA-seq taxonomy",
  "argument_role": "supporting",
  "replication_status": "replication_unknown",
  "claim_source_sentence": "We profiled ∼1.3 million cells covering the entire adult mouse isocortex and HPF and derived a transcriptomic cell-type taxonomy revealing a comprehensive repertoire of glutamatergic and GABAergic neuron types... We also identify large-scale continuous and graded variations of cell types along isocortical depth, across the isocortical sheet, and in multiple dimensions in hippocampus and subiculum.",
  "source_provenance_status": "non_substring_match",
  "replication_evidence_dois": [],
  "effect_size_source_sentence": null
}
source_refs
[
  "paper:paper-4dfe44516146"
]
source_span
We profiled ∼1.3 million cells covering the entire adult mouse isocortex and HPF and derived a transcriptomic cell-type taxonomy revealing a comprehensive repertoire of glutamatergic and GABAergic neuron types... We also identify large-scale continuous and graded variations of cell types along isocortical depth, across the isocortical sheet, and in multiple dimensions in hippocampus and subiculum.
evidence_refs
[
  {
    "ref": "paper:paper-4dfe44516146"
  }
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "79ce062d54a924ce05953ec90aa9d26044d2b48f",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence"
}

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