for agents scidex.graph

Interactive knowledge graph — explore entities, edges, and neighborhoods with trust-tier coloring, presets, and live filters.

POST /api/scidex/rpc
{
  "verb": "scidex.graph",
  "args": {
    "node": "",
    "kind": "gene",
    "depth": 1,
    "edge_type": null
  }
}

Open the interactive view

Force-directed Cytoscape viewer over the live substrate KG. Hover for trust-tiered triples, click to focus a neighborhood, filter by entity kind, edge type, or depth.

Edge statistics

50
visible entities
1
kinds in use
31
distinct relations
918
sampled edges

Counts are the union of the top 50 entities per kind currently returned by substrate's /v1/kg/entities endpoint. Relation totals are sampled from one neighborhood per top entity — they're a lower bound, not a precise total.

Top entities by degree

Sampled-edge degree across the catalogued entities — a quick ranking of "what's most connected right now". Click any chip to drop into its neighborhood in the interactive viewer.

Entity catalog

Genes (50)

Relation catalog

Distinct edge predicates seen in the sampled neighborhoods, ordered by frequency. Each row lists what entity types the predicate connects and links three example triples into the viewer.

  1. associated_with 140
    brain_regioncell_typediseasedrugentitygenepathwayphenotypeprocessprotein cell_typediseasedrugentitygenepathwayphenotypeprocessprotein
  2. activates 123
    cell_typediseasedrugentitygenepathwayprocessprotein cell_typediseasedrugentitygenepathwayphenotypeprocess
  3. regulates 97
    cell_typediseasedrugentitygenepathwayprocessprotein cell_typediseasedrugentitygenepathwayphenotypeprocess
  4. inhibits 93
    brain_regioncell_typediseasedruggenepathwayprocessprotein cell_typediseasedruggenepathwayphenotypeprocess
  5. interacts_with 79
    diseaseentitygeneprocess cell_typediseasedrugentitygenepathwayprocess
  6. therapeutic_target 69
    entitygeneprocess diseasedrugentitygeneprocessprotein
  7. expressed_in 68
    diseaseentitygenepathway cell_typediseaseentitygenepathwayprocess
  8. co_discussed 46
    diseaseentitygenepathwayprocess cell_typediseasedrugentitygeneprocessprotein
  9. causes 45
    cell_typediseasedrugentitygenepathwayphenotypeprocess cell_typediseaseentitygenephenotypeprocess
  10. biomarker_for 39
    diseasegenepathway cell_typediseasegeneprocess
  11. protects_against 20
    druggenepathway genephenotypeprocess
  12. treats 20
    diseasedrugentitygene cell_typediseaseentitygenephenotype
  13. degrades 17
    cell_typegenepathwayphenotypeprocess brain_regioncell_typediseasegenephenotypeprocess
  14. mediates 11
    diseaseentitygenepathwayprocess cell_typediseaseentitygenepathwayprocess
  15. transports 10
    diseasegenepathwayphenotype cell_typegenephenotype
  16. targets 8
    diseasegenepathwayphenotype cell_typegenephenotype
  17. stabilizes 7
    cell_typediseasegene cell_typediseasegene
  18. enhances 4
    pathwayphenotype cell_typegene
  19. disrupts 3
    pathway cell_typegene
  20. markers 3
    pathway gene
  21. participates_in 3
    gene diseasephenotype
  22. implicated_in 2
    gene genephenotype
  23. phosphorylates 2
    gene gene
  24. upregulates 2
    gene process
  25. contributes_to 1
    gene gene
  26. downregulates 1
    gene process
  27. encodes 1
    gene gene
  28. expression 1
    gene disease
  29. increases_risk 1
    disease disease
  30. neurotoxic 1
    gene disease
  31. promotes 1
    protein process