Details

scope
mouse, primary somatosensory cortex (P30)
claim_text
PROX1 is expressed in 84% of LGE/CGE/POA-derived cortical interneurons and labels nearly all CGE-lineage cortical interneuron subtypes including 100% of VIP-expressing cells.
section_id
section_03
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_03_evidence_package.json
effect_size
84% of LGE/CGE/POA-derived interneurons PROX1+; 100% of VIP-expressing population PROX1+
review_repo
ComputationalReviewVIP
section_ref
wiki_page:computationalreviewvip-03-development
source_kind
review_finding
source_path
evidence/section_03_evidence_package.json
source_span
Results: PROX1 Identifies CR- NPY- RLN- and VIP-expressing Interneurons in the Adult Cortex Data so far showed that PROX1 is expressed in 84% of all LGE/CGE/POA-derived cortical interneurons ( Fig. 3C ).
study_system
mouse, primary somatosensory cortex (P30)
section_title
Developmental Origins and Postnatal Maturation
evidence_summary
Body section, Results: shown by genetic lineage tracing using Lhx6-Cre;Dlx1-Venus and Nkx5.1-Cre;R26R-YFP; quantification carried out in primary somatosensory cortex of P30 mice.
review_bundle_ref
analysis_bundle:ab-2ce40c33e827
replication_status
replicated
review_package_ref
analysis_bundle:ab-2ce40c33e827
source_artifact_ref
wiki_page:computationalreviewvip-03-development
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_03_evidence_package.json
commit_sha
95e761177f7d2ec565983d3307c14ec238f9677c
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP
Raw fields (4)
raw_fields
{
  "n": 3,
  "doi": "10.1371/journal.pone.0077339",
  "claim": "PROX1 is expressed in 84% of LGE/CGE/POA-derived cortical interneurons and labels nearly all CGE-lineage cortical interneuron subtypes including 100% of VIP-expressing cells.",
  "title": null,
  "cite_key": "Rubin2013",
  "evidence": "Body section, Results: shown by genetic lineage tracing using Lhx6-Cre;Dlx1-Venus and Nkx5.1-Cre;R26R-YFP; quantification carried out in primary somatosensory cortex of P30 mice.",
  "effect_size": "84% of LGE/CGE/POA-derived interneurons PROX1+; 100% of VIP-expressing population PROX1+",
  "figure_data": [
    {
      "type": "marker_quantification",
      "unit": "percent",
      "value": 84,
      "metric": "% PROX1+ within fate-mapped CGE/LGE/POA-derived interneurons (P30 mouse S1)",
      "source": "Fig. 3C",
      "context": "PROX1 IHC overlap with Lhx6-Cre;Dlx1-Venus AND Nkx5.1-Cre;R26R-YFP fate-mapped subpopulation"
    },
    {
      "type": "marker_quantification",
      "unit": "percent",
      "value": 100,
      "metric": "% PROX1+ within VIP+ neocortical interneurons",
      "source": "Fig. 4A,B",
      "context": "All VIP-expressing cortical cells co-express PROX1"
    }
  ],
  "text_access": "fulltext",
  "study_system": "mouse, primary somatosensory cortex (P30)",
  "_source_cluster": "cluster_02_development_lineage",
  "replication_status": "replicated",
  "_source_cluster_index": 0,
  "claim_source_sentence": "Results: PROX1 Identifies CR- NPY- RLN- and VIP-expressing Interneurons in the Adult Cortex Data so far showed that PROX1 is expressed in 84% of all LGE/CGE/POA-derived cortical interneurons ( Fig. 3C ).",
  "replication_evidence_dois": [
    "10.1523/jneurosci.1164-15.2015",
    "10.1523/jneurosci.1021-21.2021"
  ],
  "effect_size_source_sentence": "PROX1 was found to be expressed in large numbers of calretinin (CR)-, neuropeptide Y (NPY)- and RLN-positive cells as well as in 100% of the VIP-expressing population ( Fig. 4A,B )."
}
source_refs
[
  "paper:paper-d0d958f4bbd9"
]
evidence_refs
[
  {
    "ref": "paper:paper-d0d958f4bbd9"
  }
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "95e761177f7d2ec565983d3307c14ec238f9677c",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP"
}

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