Details

scope
human cortex, snRNA-seq, TSC patients
section_id
section_03
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_03_evidence_package.json
effect_size
MGE-derived SST+ subpopulation shows abnormal NKCC1/KCC2 ratio and downregulated GABA-A receptor subunits relative to controls
review_repo
ComputationalReviewVIP
section_ref
wiki_page:computationalreviewvip-03-development
source_kind
review_finding
source_path
evidence/section_03_evidence_package.json
source_span
The disrupted maturation of SST+ interneurons may undergo an incomplete switch from excitatory to inhibitory GABAergic signaling during development, resulting in reduced inhibitory properties.
study_system
human cortex, snRNA-seq, TSC patients
section_title
Developmental Origins and Postnatal Maturation
evidence_summary
Body, Results: single-nuclei RNA-seq in TSC patient cortical material, with cell-type-specific marker analysis of MGE- vs CGE-derived interneurons.
review_bundle_ref
analysis_bundle:ab-2ce40c33e827
replication_status
single-study
review_package_ref
analysis_bundle:ab-2ce40c33e827
source_artifact_ref
wiki_page:computationalreviewvip-03-development
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_03_evidence_package.json
commit_sha
95e761177f7d2ec565983d3307c14ec238f9677c
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP
Raw fields (5)
claim_text
In tuberous sclerosis complex (TSC) patient cortex, somatostatin-expressing (SST+) MGE-derived interneurons display an immature transcriptional signature including an abnormal NKCC1/KCC2 ratio, suggesting an incomplete excitatory-to-inhibitory GABAergic developmental switch — a CGE-vs-MGE lineage-selective vulnerability with implications for postnatal interneuron maturation.
raw_fields
{
  "n": null,
  "doi": "10.1007/s00401-024-02737-7",
  "claim": "In tuberous sclerosis complex (TSC) patient cortex, somatostatin-expressing (SST+) MGE-derived interneurons display an immature transcriptional signature including an abnormal NKCC1/KCC2 ratio, suggesting an incomplete excitatory-to-inhibitory GABAergic developmental switch — a CGE-vs-MGE lineage-selective vulnerability with implications for postnatal interneuron maturation.",
  "title": null,
  "cite_key": "Scheper2024",
  "evidence": "Body, Results: single-nuclei RNA-seq in TSC patient cortical material, with cell-type-specific marker analysis of MGE- vs CGE-derived interneurons.",
  "effect_size": "MGE-derived SST+ subpopulation shows abnormal NKCC1/KCC2 ratio and downregulated GABA-A receptor subunits relative to controls",
  "text_access": "fulltext",
  "study_system": "human cortex, snRNA-seq, TSC patients",
  "_source_cluster": "cluster_02_development_lineage",
  "replication_status": "single-study",
  "_source_cluster_index": 5,
  "claim_source_sentence": "The disrupted maturation of SST+ interneurons may undergo an incomplete switch from excitatory to inhibitory GABAergic signaling during development, resulting in reduced inhibitory properties.",
  "replication_evidence_dois": [],
  "effect_size_source_sentence": "Notably, this study reveals markers of immaturity specifically in SST+ interneurons, including an abnormal NKCC1/KCC2 ratio, indicating an imbalance in chloride homeostasis crucial for the postsynaptic consequences of GABAergic signaling as well as the downregulation of GABA A receptor subunits."
}
source_refs
[
  "paper:paper-9a4f0475d0ca"
]
evidence_refs
[
  {
    "ref": "paper:paper-9a4f0475d0ca"
  }
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "95e761177f7d2ec565983d3307c14ec238f9677c",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP"
}

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