for agents scidex.graph

Interactive knowledge graph — explore entities, edges, and neighborhoods with trust-tier coloring, presets, and live filters.

POST /api/scidex/rpc
{
  "verb": "scidex.graph",
  "args": {
    "node": "",
    "kind": "biological_process",
    "depth": 1,
    "edge_type": null
  }
}

Open the interactive view

Force-directed Cytoscape viewer over the live substrate KG. Hover for trust-tiered triples, click to focus a neighborhood, filter by entity kind, edge type, or depth.

Edge statistics

46
visible entities
1
kinds in use
13
distinct relations
108
sampled edges

Counts are the union of the top 50 entities per kind currently returned by substrate's /v1/kg/entities endpoint. Relation totals are sampled from one neighborhood per top entity — they're a lower bound, not a precise total.

Top entities by degree

Sampled-edge degree across the catalogued entities — a quick ranking of "what's most connected right now". Click any chip to drop into its neighborhood in the interactive viewer.

Entity catalog

Pathways (46)

Relation catalog

Distinct edge predicates seen in the sampled neighborhoods, ordered by frequency. Each row lists what entity types the predicate connects and links three example triples into the viewer.

  1. causes 21
    cellular_mechanismentityprocess cellular_mechanismdiseaseentityprocess
  2. causal_modulates 18
    biological_processgenepathwayphenotypeprotein biological_processentityprotein
  3. prevents 16
    entity entity
  4. causal_causes 13
    biological_processbrain_regioncell_typediseasegenemechanismphenotypeprocess biological_processcell_typeprotein
  5. causal_prevents 10
    biological_processbrain_regioncompoundconceptgeneprocessprotein biological_processdisease
  6. modulates 9
    entity entity
  7. activates 7
    drugprocess process
  8. regulates 4
    diseasepathwayprocess brain_regioncell_typeprocess
  9. associated_with 3
    druggene brain_regionpathway
  10. expressed_in 2
    cell_typeprotein brain_region
  11. inhibits 2
    drugprocess process
  12. involved_in 2
    brain_regiongene pathwayphenotype
  13. amplifies 1
    cellular_mechanism cellular_mechanism