Details
- scope
- human, MTG (adult, snRNA-seq)
- section_id
- section_03
- source_url
- https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_03_evidence_package.json
- effect_size
- 21 transcriptomically distinct VIP types in human MTG (vs fewer in mouse)
- review_repo
- ComputationalReviewVIP
- section_ref
- wiki_page:computationalreviewvip-03-development
- source_kind
- review_finding
- source_path
- evidence/section_03_evidence_package.json
- source_span
- VIP was the most diverse subclass (21 types), with many types enriched in upper layers ( Fig. 3a ). Several VIP types were closely related to the LAMP5/PAX6 type L1 LAMP5 NMBR and localized to L1-L2.
- study_system
- human, MTG (adult, snRNA-seq)
- section_title
- Developmental Origins and Postnatal Maturation
- evidence_summary
- snRNA-seq of human MTG (8 donors, ~16,000 nuclei); 45 GABAergic types parsed; ADARB2-branch organization with LAMP5/PAX6 vs VIP subclasses.
- review_bundle_ref
- analysis_bundle:ab-2ce40c33e827
- replication_status
- primary
- review_package_ref
- analysis_bundle:ab-2ce40c33e827
- source_artifact_ref
- wiki_page:computationalreviewvip-03-development
- origin_url
- https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_03_evidence_package.json
- commit_sha
- 95e761177f7d2ec565983d3307c14ec238f9677c
- created_by
- persona-jerome-lecoq-gbo-neuroscience
- repository_url
- https://github.com/AllenNeuralDynamics/ComputationalReviewVIP
Raw fields (5)
- claim_text
VIP is the most transcriptomically diverse interneuron subclass in human middle temporal gyrus (21 types), with many VIP types enriched in upper layers and several closely related to a layer 1–2 LAMP5/PAX6 (L1 LAMP5 NMBR) type — indicating extensive intra-VIP molecular heterogeneity in human cortex.
- raw_fields
{ "n": null, "doi": "10.1038/s41586-019-1506-7", "claim": "VIP is the most transcriptomically diverse interneuron subclass in human middle temporal gyrus (21 types), with many VIP types enriched in upper layers and several closely related to a layer 1–2 LAMP5/PAX6 (L1 LAMP5 NMBR) type — indicating extensive intra-VIP molecular heterogeneity in human cortex.", "title": null, "cite_key": "Hodge2019", "evidence": "snRNA-seq of human MTG (8 donors, ~16,000 nuclei); 45 GABAergic types parsed; ADARB2-branch organization with LAMP5/PAX6 vs VIP subclasses.", "effect_size": "21 transcriptomically distinct VIP types in human MTG (vs fewer in mouse)", "figure_data": [ { "type": "cell_type_count", "unit": "types", "value": 21, "metric": "Number of transcriptomic VIP types in human MTG", "source": "Hodge 2019 Fig. 3a", "context": "Most diverse interneuron subclass; many enriched in upper layers" } ], "text_access": "fulltext", "study_system": "human, MTG (adult, snRNA-seq)", "_source_cluster": "cluster_02_development_lineage", "replication_status": "primary", "_source_cluster_index": 100, "claim_source_sentence": "VIP was the most diverse subclass (21 types), with many types enriched in upper layers ( Fig. 3a ). Several VIP types were closely related to the LAMP5/PAX6 type L1 LAMP5 NMBR and localized to L1-L2.", "replication_evidence_dois": [], "effect_size_source_sentence": "VIP was the most diverse subclass (21 types), with many types enriched in upper layers ( Fig. 3a )." }- source_refs
[ "paper:paper-pm-31435019" ]
- evidence_refs
[ { "ref": "paper:paper-pm-31435019" } ]- source_policy
{ "mode": "public_source_pointer_with_short_context", "notes": [ "Local review repositories are read-only inputs.", "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose." ], "source_commit_sha": "95e761177f7d2ec565983d3307c14ec238f9677c", "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP" }