Details

scope
human, MTG (adult, snRNA-seq)
section_id
section_03
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_03_evidence_package.json
effect_size
21 transcriptomically distinct VIP types in human MTG (vs fewer in mouse)
review_repo
ComputationalReviewVIP
section_ref
wiki_page:computationalreviewvip-03-development
source_kind
review_finding
source_path
evidence/section_03_evidence_package.json
source_span
VIP was the most diverse subclass (21 types), with many types enriched in upper layers ( Fig. 3a ). Several VIP types were closely related to the LAMP5/PAX6 type L1 LAMP5 NMBR and localized to L1-L2.
study_system
human, MTG (adult, snRNA-seq)
section_title
Developmental Origins and Postnatal Maturation
evidence_summary
snRNA-seq of human MTG (8 donors, ~16,000 nuclei); 45 GABAergic types parsed; ADARB2-branch organization with LAMP5/PAX6 vs VIP subclasses.
review_bundle_ref
analysis_bundle:ab-2ce40c33e827
replication_status
primary
review_package_ref
analysis_bundle:ab-2ce40c33e827
source_artifact_ref
wiki_page:computationalreviewvip-03-development
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_03_evidence_package.json
commit_sha
95e761177f7d2ec565983d3307c14ec238f9677c
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP
Raw fields (5)
claim_text
VIP is the most transcriptomically diverse interneuron subclass in human middle temporal gyrus (21 types), with many VIP types enriched in upper layers and several closely related to a layer 1–2 LAMP5/PAX6 (L1 LAMP5 NMBR) type — indicating extensive intra-VIP molecular heterogeneity in human cortex.
raw_fields
{
  "n": null,
  "doi": "10.1038/s41586-019-1506-7",
  "claim": "VIP is the most transcriptomically diverse interneuron subclass in human middle temporal gyrus (21 types), with many VIP types enriched in upper layers and several closely related to a layer 1–2 LAMP5/PAX6 (L1 LAMP5 NMBR) type — indicating extensive intra-VIP molecular heterogeneity in human cortex.",
  "title": null,
  "cite_key": "Hodge2019",
  "evidence": "snRNA-seq of human MTG (8 donors, ~16,000 nuclei); 45 GABAergic types parsed; ADARB2-branch organization with LAMP5/PAX6 vs VIP subclasses.",
  "effect_size": "21 transcriptomically distinct VIP types in human MTG (vs fewer in mouse)",
  "figure_data": [
    {
      "type": "cell_type_count",
      "unit": "types",
      "value": 21,
      "metric": "Number of transcriptomic VIP types in human MTG",
      "source": "Hodge 2019 Fig. 3a",
      "context": "Most diverse interneuron subclass; many enriched in upper layers"
    }
  ],
  "text_access": "fulltext",
  "study_system": "human, MTG (adult, snRNA-seq)",
  "_source_cluster": "cluster_02_development_lineage",
  "replication_status": "primary",
  "_source_cluster_index": 100,
  "claim_source_sentence": "VIP was the most diverse subclass (21 types), with many types enriched in upper layers ( Fig. 3a ). Several VIP types were closely related to the LAMP5/PAX6 type L1 LAMP5 NMBR and localized to L1-L2.",
  "replication_evidence_dois": [],
  "effect_size_source_sentence": "VIP was the most diverse subclass (21 types), with many types enriched in upper layers ( Fig. 3a )."
}
source_refs
[
  "paper:paper-pm-31435019"
]
evidence_refs
[
  {
    "ref": "paper:paper-pm-31435019"
  }
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "95e761177f7d2ec565983d3307c14ec238f9677c",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP"
}

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