Details

scope
mouse V1 in vivo imaging + scRNA-seq + intrinsic-property reference atlases
section_id
section_05
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_05_evidence_package.json
effect_size
qualitative — 1-D transcriptomic axis correlates with both physiology and state-modulation
review_repo
ComputationalReviewVIP
section_ref
wiki_page:computationalreviewvip-05-electrophysiology
source_kind
review_finding
source_path
evidence/section_05_evidence_package.json
study_system
mouse V1 in vivo imaging + scRNA-seq + intrinsic-property reference atlases
section_title
Intrinsic Electrophysiology
evidence_summary
in vivo two-photon Ca2+ imaging during locomotion + post-hoc transcriptomics in mouse V1; cross-referenced with Patch-seq intrinsic-property atlases
review_bundle_ref
analysis_bundle:ab-2ce40c33e827
replication_status
replication_unknown
review_package_ref
analysis_bundle:ab-2ce40c33e827
source_artifact_ref
wiki_page:computationalreviewvip-05-electrophysiology
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP/blob/95e761177f7d2ec565983d3307c14ec238f9677c/evidence/section_05_evidence_package.json
commit_sha
95e761177f7d2ec565983d3307c14ec238f9677c
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewVIP
Raw fields (6)
claim_text
Cortical inhibitory neurons exhibit variation along transcriptomic continua that predict their intrinsic physiological properties; a single transcriptomic continuum explains a large portion of differences in state-modulation and intrinsic membrane properties across Pvalb/Sst/Vip/Lamp5/Sncg subtypes.
raw_fields
{
  "n": null,
  "doi": "10.1038/s41586-022-04915-7",
  "claim": "Cortical inhibitory neurons exhibit variation along transcriptomic continua that predict their intrinsic physiological properties; a single transcriptomic continuum explains a large portion of differences in state-modulation and intrinsic membrane properties across Pvalb/Sst/Vip/Lamp5/Sncg subtypes.",
  "title": null,
  "cite_key": "Bugeon2022",
  "evidence": "in vivo two-photon Ca2+ imaging during locomotion + post-hoc transcriptomics in mouse V1; cross-referenced with Patch-seq intrinsic-property atlases",
  "effect_size": "qualitative — 1-D transcriptomic axis correlates with both physiology and state-modulation",
  "text_access": "fulltext",
  "study_system": "mouse V1 in vivo imaging + scRNA-seq + intrinsic-property reference atlases",
  "_source_cluster": "cluster_04_intrinsic_electrophysiology",
  "replication_status": "replication_unknown",
  "_source_cluster_index": 31,
  "claim_source_sentence": "These differences in state modulation were explained in large part by a single transcriptomic continuum, which also correlated with the intrinsic membrane properties and morphology of these subtypes as assessed in vitro 7, and with their expression of excitatory and inhibitory cholinergic receptors.",
  "replication_evidence_dois": [],
  "effect_size_source_sentence": "These differences in state modulation were explained in large part by a single transcriptomic continuum, which also correlated with the intrinsic membrane properties and morphology of these subtypes as assessed in vitro 7."
}
source_refs
[
  "paper:paper-062fda557edf"
]
source_span
These differences in state modulation were explained in large part by a single transcriptomic continuum, which also correlated with the intrinsic membrane properties and morphology of these subtypes as assessed in vitro 7, and with their expression of excitatory and inhibitory cholinergic receptors.
evidence_refs
[
  {
    "ref": "paper:paper-062fda557edf"
  }
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "95e761177f7d2ec565983d3307c14ec238f9677c",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewVIP"
}

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