Details

scope
mouse cortex in vivo, two-photon holographic optogenetics + whole-cell recording, methodological
section_id
section_05
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_05_evidence_package.json
effect_size
Multi-cell holographic stim + compressive sensing recovers connectivity orders of magnitude faster than sequential single-cell probing
review_repo
ComputationalReviewRecurrence
section_ref
wiki_page:computationalreviewrecurrence-05-horizontal
source_kind
review_finding
source_path
evidence/section_05_evidence_package.json
study_system
mouse cortex in vivo, two-photon holographic optogenetics + whole-cell recording, methodological
section_title
5. Horizontal long-range intracortical excitatory connections in mouse — patchy L2/3-L5 axons, similarity tuning, distance-decay
review_bundle_ref
analysis_bundle:ab-d9c479db9be9
replication_status
single_study
review_package_ref
analysis_bundle:ab-d9c479db9be9
source_artifact_ref
wiki_page:computationalreviewrecurrence-05-horizontal
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_05_evidence_package.json
commit_sha
79ce062d54a924ce05953ec90aa9d26044d2b48f
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence
Raw fields (7)
claim_text
Combining two-photon holographic optogenetic stimulation of presynaptic candidates with whole-cell recording from a postsynaptic neuron and compressive-sensing reconstruction substantially increases the throughput of in vivo monosynaptic excitatory–excitatory connectivity mapping in mouse cortex.
raw_fields
{
  "n": 0,
  "doi": "10.1038/s41593-025-02024-y",
  "claim": "Combining two-photon holographic optogenetic stimulation of presynaptic candidates with whole-cell recording from a postsynaptic neuron and compressive-sensing reconstruction substantially increases the throughput of in vivo monosynaptic excitatory–excitatory connectivity mapping in mouse cortex.",
  "cite_key": "Chen2025b",
  "evidence": "Combined in vivo two-photon holographic patterned photostimulation of candidate presynaptic pyramidal neurons with simultaneous whole-cell recording from postsynaptic targets in mouse cortex; sparse-recovery via compressive sensing applied to multi-cell stimulation patterns.",
  "effect_size": "Multi-cell holographic stim + compressive sensing recovers connectivity orders of magnitude faster than sequential single-cell probing",
  "text_access": "fulltext",
  "study_system": "mouse cortex in vivo, two-photon holographic optogenetics + whole-cell recording, methodological",
  "argument_role": "supporting",
  "replication_status": "single_study",
  "claim_source_sentence": "Here, we present a framework for increasing mapping throughput and speed that combines two-photon holographic optogenetic stimulation of presynaptic neurons, whole-cell recordings of postsynaptic responses and compressive sensing reconstruction of sparse connectivity.",
  "source_provenance_status": "ok",
  "replication_evidence_dois": [],
  "effect_size_source_sentence": "We further demonstrate the speed and throughput of the method by combining 2P optogenetic multi-cell stimulation with compressive sensing (CS), an approach that uses sparsity and incoherent sampling to find a solution to the unknown connectivity vector in an underdetermined linear system of equations."
}
source_refs
[
  "paper:paper-218c7dbe65b1"
]
source_span
Here, we present a framework for increasing mapping throughput and speed that combines two-photon holographic optogenetic stimulation of presynaptic neurons, whole-cell recordings of postsynaptic responses and compressive sensing reconstruction of sparse connectivity.
evidence_refs
[
  {
    "ref": "paper:paper-218c7dbe65b1"
  }
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "79ce062d54a924ce05953ec90aa9d26044d2b48f",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence"
}
evidence_summary
Combined in vivo two-photon holographic patterned photostimulation of candidate presynaptic pyramidal neurons with simultaneous whole-cell recording from postsynaptic targets in mouse cortex; sparse-recovery via compressive sensing applied to multi-cell stimulation patterns.

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