Details

scope
mouse cortex layer 5
section_id
section_11
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewLoops/blob/0632aae8abc141909207fe91f6349b9e36489c3b/evidence/section_11_evidence_package.json
effect_size
5 PV
review_repo
ComputationalReviewLoops
section_ref
wiki_page:computationalreviewloops-11
source_kind
review_finding
source_path
evidence/section_11_evidence_package.json
study_system
mouse cortex layer 5
section_title
Cell-Type-Specific Dissection of Loop Circuits (Opto/Chemo/Tracing)
evidence_summary
Quantitative colocalization with GAD1, Vglut1, WFA in single Cre vs. intersectional reporter lines.
review_bundle_ref
analysis_bundle:ab-d49e54403ef9
replication_status
contested
review_package_ref
analysis_bundle:ab-d49e54403ef9
source_artifact_ref
wiki_page:computationalreviewloops-11
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewLoops/blob/0632aae8abc141909207fe91f6349b9e36489c3b/evidence/section_11_evidence_package.json
commit_sha
0632aae8abc141909207fe91f6349b9e36489c3b
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewLoops
Raw fields (6)
claim_text
A substantial proportion of layer 5 cortical neurons labeled by the standard PV-Cre/tdTomato line are excitatory rather than inhibitory; the Vgat-Cre/PV-Flp/tdTomato intersectional combination provides specific labeling of GABAergic PV interneurons.
raw_fields
{
  "n": 7,
  "doi": "10.1038/s41598-024-52901-y",
  "claim": "A substantial proportion of layer 5 cortical neurons labeled by the standard PV-Cre/tdTomato line are excitatory rather than inhibitory; the Vgat-Cre/PV-Flp/tdTomato intersectional combination provides specific labeling of GABAergic PV interneurons.",
  "cite_key": "Palicz2024",
  "evidence": "Quantitative colocalization with GAD1, Vglut1, WFA in single Cre vs. intersectional reporter lines.",
  "effect_size": "5 PV",
  "text_access": "fulltext",
  "study_system": "mouse cortex layer 5",
  "source_cluster_id": "cluster_10",
  "replication_status": "contested",
  "claim_source_sentence": "The colocalization of the transgene (tdTomato) with the parvalbumin protein, with GAD1 (a conclusive inhibitory cell marker) and Vglut1 (a conclusive excitatory cell marker) as well as with a marker for perineuronal nets (WFA) was assessed and a substantial proportion of layer 5 PV neurons was found to be excitatory and not inhibitory in the PV-Cre/tdTomato mouse.",
  "replication_evidence_dois": [],
  "effect_size_source_sentence": "The colocalization of the transgene (tdTomato) with the parvalbumin protein, with GAD1 (a conclusive inhibitory cell marker) and Vglut1 (a conclusive excitatory cell marker) as well as with a marker for perineuronal nets (WFA) was assessed and a substantial proportion of layer 5 PV neurons was found to be excitatory and not inhibitory in the PV-Cre/tdTomato mouse."
}
source_refs
[
  "paper:paper-c4df4e8ee950"
]
source_span
The colocalization of the transgene (tdTomato) with the parvalbumin protein, with GAD1 (a conclusive inhibitory cell marker) and Vglut1 (a conclusive excitatory cell marker) as well as with a marker for perineuronal nets (WFA) was assessed and a substantial proportion of layer 5 PV neurons was found to be excitatory and not inhibitory in the PV-Cre/tdTomato mouse.
evidence_refs
[
  {
    "ref": "paper:paper-c4df4e8ee950"
  }
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "0632aae8abc141909207fe91f6349b9e36489c3b",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewLoops"
}

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