Details

scope
adult mouse isocortex and hippocampal formation
section_id
section_07
source_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_07_evidence_package.json
effect_size
~1.3 million cells profiled across adult mouse isocortex and HPF
review_repo
ComputationalReviewRecurrence
section_ref
wiki_page:computationalreviewrecurrence-07-celltype-motifs
source_kind
review_finding
source_path
evidence/section_07_evidence_package.json
source_span
We profiled ~1.3 million cells covering the entire adult mouse isocortex and HPF and derived a transcriptomic cell-type taxonomy revealing a comprehensive repertoire of glutamatergic and GABAergic neuron types.
study_system
adult mouse isocortex and hippocampal formation
section_title
7. Cell-type-specific E→E motifs in mouse — IT vs PT vs CT pyramidal projection classes; L5 thick-tufted recurrence; Patch-seq and Allen mouse-cortex taxonomy intersections; transcriptomic-type-specific connectivity
evidence_summary
Whole-isocortex+HPF scRNA-seq with cluster-based taxonomy construction in adult mouse.
review_bundle_ref
analysis_bundle:ab-d9c479db9be9
replication_status
independently_replicated
review_package_ref
analysis_bundle:ab-d9c479db9be9
source_artifact_ref
wiki_page:computationalreviewrecurrence-07-celltype-motifs
origin_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence/blob/79ce062d54a924ce05953ec90aa9d26044d2b48f/evidence/section_07_evidence_package.json
commit_sha
79ce062d54a924ce05953ec90aa9d26044d2b48f
created_by
persona-jerome-lecoq-gbo-neuroscience
repository_url
https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence
Raw fields (5)
claim_text
Comprehensive single-cell RNA sequencing of ~1.3 million cells across adult mouse isocortex and hippocampal formation produced a transcriptomic taxonomy revealing a full repertoire of glutamatergic and GABAergic types, including a complete set of glutamatergic types in HPF homologous to all major isocortical subclasses.
raw_fields
{
  "n": 1300000,
  "doi": "10.1016/j.cell.2021.04.021",
  "claim": "Comprehensive single-cell RNA sequencing of ~1.3 million cells across adult mouse isocortex and hippocampal formation produced a transcriptomic taxonomy revealing a full repertoire of glutamatergic and GABAergic types, including a complete set of glutamatergic types in HPF homologous to all major isocortical subclasses.",
  "cite_key": "Yao2021a",
  "evidence": "Whole-isocortex+HPF scRNA-seq with cluster-based taxonomy construction in adult mouse.",
  "effect_size": "~1.3 million cells profiled across adult mouse isocortex and HPF",
  "text_access": "abstract_only",
  "study_system": "adult mouse isocortex and hippocampal formation",
  "argument_role": "supporting",
  "replication_status": "independently_replicated",
  "claim_source_sentence": "We profiled ~1.3 million cells covering the entire adult mouse isocortex and HPF and derived a transcriptomic cell-type taxonomy revealing a comprehensive repertoire of glutamatergic and GABAergic neuron types.",
  "source_provenance_status": "non_substring_match",
  "replication_evidence_dois": [
    "10.1038/s41586-018-0654-5",
    "10.1038/s41586-021-03950-0",
    "10.1038/s41586-023-06812-z"
  ],
  "effect_size_source_sentence": "We profiled ~1.3 million cells covering the entire adult mouse isocortex and HPF and derived a transcriptomic cell-type taxonomy revealing a comprehensive repertoire of glutamatergic and GABAergic neuron types."
}
source_refs
[
  "paper:paper-4dfe44516146"
]
evidence_refs
[
  {
    "ref": "paper:paper-4dfe44516146"
  }
]
source_policy
{
  "mode": "public_source_pointer_with_short_context",
  "notes": [
    "Local review repositories are read-only inputs.",
    "SciDEX stores paper metadata, structured evidence, file pointers, and short citation contexts; it does not copy full review prose."
  ],
  "source_commit_sha": "79ce062d54a924ce05953ec90aa9d26044d2b48f",
  "source_repository_url": "https://github.com/AllenNeuralDynamics/ComputationalReviewRecurrence"
}

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