for agents scidex.graph

Interactive knowledge graph — explore entities, edges, and neighborhoods with trust-tier coloring, presets, and live filters.

POST /api/scidex/rpc
{
  "verb": "scidex.graph",
  "args": {
    "node": "",
    "kind": null,
    "depth": 1,
    "edge_type": null
  }
}

Open the interactive view

Force-directed Cytoscape viewer over the live substrate KG. Hover for trust-tiered triples, click to focus a neighborhood, filter by entity kind, edge type, or depth.

Edge statistics

196
visible entities
4
kinds in use
48
distinct relations
1,590
sampled edges

Counts are the union of the top 50 entities per kind currently returned by substrate's /v1/kg/entities endpoint. Relation totals are sampled from one neighborhood per top entity — they're a lower bound, not a precise total.

Top entities by degree

Sampled-edge degree across the catalogued entities — a quick ranking of "what's most connected right now". Click any chip to drop into its neighborhood in the interactive viewer.

Entity catalog

Genes (50)

Diseases (50)

Pathways (46)

Phenotypes (50)

Relation catalog

Distinct edge predicates seen in the sampled neighborhoods, ordered by frequency. Each row lists what entity types the predicate connects and links three example triples into the viewer.

  1. associated_with 211
    biomarkerbrain_regioncell_typediseasedrugentitygenepathwayphenotypeprocessproteinreceptor brain_regioncell_typediseasedrugentitygenepathwayphenotypeprocessprotein
  2. activates 194
    cell_typediseasedrugentitygenepathwayphenotypeprocessprotein cell_typeconceptdiseasedrugentitygenepathwayphenotypeprocessprotein
  3. inhibits 143
    brain_regioncell_typediseasedrugentitygenepathwayphenotypeprocessprotein cell_typeconceptdiseasedruggenepathwayphenotypeprocess
  4. causes 138
    cell_typecellular_mechanismcompounddiseasedrugentitygenepathwayphenotypeprocessprotein cell_typecellular_mechanismdiseaseentitygenepathwayphenotypeprocess
  5. regulates 138
    cell_typediseasedrugentitygenepathwayphenotypeprocessprotein brain_regioncell_typeconceptdiseasedrugentitygenepathwayphenotypeprocessprotein
  6. interacts_with 110
    diseaseentitygeneprocess cell_typediseasedrugentitygenepathwayphenotypeprocess
  7. therapeutic_target 106
    diseaseentitygeneprocess diseasedrugentitygeneprocessprotein
  8. expressed_in 99
    cell_typediseaseentitygenepathwayphenotypeprotein brain_regioncell_typeconceptdiseaseentitygenepathwayprocess
  9. biomarker_for 59
    diseasegenepathwayphenotype cell_typediseasegeneprocess
  10. co_discussed 47
    diseaseentitygenepathwayprocess cell_typediseasedrugentitygeneprocessprotein
  11. protects_against 47
    biomarkercompounddruggenepathwayphenotypeprocessprotein cell_typeconceptdiseasegenephenotypeprocess
  12. treats 39
    compounddiseasedrugentitygene cell_typediseaseentitygenephenotype
  13. prevents 30
    entityprotein entitymechanism
  14. degrades 25
    cell_typediseasegenepathwayphenotypeprocess brain_regioncell_typediseasegenephenotypeprocess
  15. modulates 21
    biomarkerentitygeneprocessprotein entityphenotypeprocessprotein
  16. causal_causes 19
    biological_processbrain_regioncell_typediseaseentitygenemechanismphenotypeprocess biological_processcell_typegenemechanismprocessproteinreceptor
  17. causal_modulates 18
    biological_processgenepathwayphenotypeprotein biological_processentityprotein
  18. targets 18
    diseasegenehypothesispathwayphenotype cell_typediseasegenepathwayphenotype
  19. transports 17
    diseasegenepathwayphenotype cell_typediseasegenephenotype
  20. causal_prevents 15
    biological_processbrain_regioncompoundconceptentitygeneprocessprotein biological_processcell_typecompounddiseaseentitygeneprocess
  21. mediates 13
    diseaseentitygenepathwayprocess cell_typediseaseentitygenepathwayprocess
  22. stabilizes 9
    cell_typediseasegene cell_typediseasegene
  23. phosphorylates 8
    diseasegene diseasegene
  24. contributes_to 7
    geneprocessproteinwiki genephenotypeprocess
  25. enhances 6
    genepathwayphenotype cell_typegenepathway
  26. participates_in 6
    gene diseasepathwayphenotype
  27. disrupts 5
    genepathway cell_typediseasegene
  28. encodes 5
    gene diseasegene
  29. implicated_in 4
    gene diseasegenephenotype
  30. risk_factor_for 4
    geneprocess disease
  31. accumulates_in 3
    gene diseasegene
  32. markers 3
    pathway gene
  33. upregulates 3
    gene diseaseprocess
  34. co_expressed_with 2
    phenotype phenotype
  35. co_mentioned 2
    genepathway process
  36. debate_co_mention 2
    genepathway process
  37. involved_in 2
    brain_regiongene pathwayphenotype
  38. promotes 2
    processprotein process
  39. affects 1
    disease cell_type
  40. amplifies 1
    cellular_mechanism cellular_mechanism
  41. correlates_with 1
    protein phenotype
  42. depleted_in 1
    disease gene
  43. downregulates 1
    gene process
  44. drives 1
    process process
  45. elevates 1
    process protein
  46. expression 1
    gene disease
  47. increases_risk 1
    disease disease
  48. neurotoxic 1
    gene disease